BAC Information

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BAC

Clone NameMSMg01-191K17
Chromosome1 (Build37)
Map Location 75,291,123 - 75,291,409
singlet/doubletsinglet
Overlap genenone
Upstream geneArpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18
Downstream geneDnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191K17.T7 (MSMg01no191_k17.b1)MSMg01-191K17.TJ (MSMg01no191_k17.g1)
ACCAG381604AG381605
length811724
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no191_k17.b1 PHD_FILE: MSMg01no191_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:22 2005CHROMAT_FILE: MSMg01no191_k17.g1 PHD_FILE: MSMg01no191_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTTTTTTTTTTTTTTTCTTCTTTACCACCCNGNNNNNNNNNNACAT
CTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGCC
ATTCCAGGTTGCACTTTTTGCCGTAGTCAACAGAATGTCGCTCCATCAAC
CGAGAGGTGAATGCTGAGCCTGTGCCCCCTCCAAAGCTGTGCAATACTAG
GAATACCTGAGGTCCTGTGCACTGATCCGATTGACAGGTTACGAAGACAT
AGCAATATTTGTAGTTGAAAGGCCTGAAGGATTTTCTAGTCTCGCGCTGT
ATAAAGTGACTCAGATGACAGGAGGGACAGTGATTATCCACTAATAGTCT
CACTTACTGAGACACTGTTATCGTTCATCCTACATATGGATCCGACCAAA
ATAAATTACCGGATTTGGTATTCCCCCCCCCCACCCTCCCTGACAAGCCG
AGTGCAATCGTGTCACCTTGCGAATACGCAAAAAAAAAAGACCCGTGGTG
CCGTGTGTCACAGACTAATAGACCAACTGACTAATTGAGGGGCTGCCTGT
TCCCTTCACGAGTATACCCTGTTGTGTATGCTATAGGTGATGTGTTCCCC
GGACTGATTATCCTATCCAGATATACCCGTTGTTATCGTTGACCATACAC
TAATGAATCCTATCCGTTTCCACCTATTGTAAATCTTGTTCTGCGGACTA
GACTCCCTTAAACGATTAAAAAGACTTGCCCACCCCTTTTCTCCCCTCTT
TTATTATTTGTTCCCTTTTCCCTCCTCTTGTTATCTTATTCGGCCCATAC
CAACCTTCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACACAACACAGAGAAACTCT
GCACGTCCAGACCAAAACAAAACACAAAATAAAAACAAAACCCACAAACA
AAAAAAATTCCTGAGCCTTGGCAGGTAGGTAGAAGAGCAGGAATTGTCAG
GCTGGTTGGCACTGCTGTTGGTGGCACCCACTTGGGTGAGGAGGGTGGTA
CTGAGCCAGGCCCAGGAAGACTGGAGCAACGCATCTGATTCTGTCCCCTG
CTGCCAAGCACCTGGAGATGTGAAAAGTGTGATTGGGATTTTGTCAGCTC
CCACCAGGAGAATTTTACCTGACCTGCCTACAAGGCTGGTGTGCAGCATG
GTGGGCGGCCCTAACTGAAGCTCTGGAAAAGGAAAGGTAGTGGGTGTTGT
GTAGGCCAAGGTTTAAAACAGGAAGATGAGTGTGGGAACTAGGAGAAATG
GTTGATGATGAGGGTTCAGCAGGGAGAATAGGGTGGACCCTGTGGCTCAG
GTTACTGGGTACCCAACCTTATGGTCTTGGCACACAAACCAATTATCCCT
GATTCCACCAAAAATTTTATCCCACCCCCCCCTCTAATAATCTGCCTTAA
TGAAAAGCACAATTTCCCCCTCCCCCTAAATTTTACAATGTAACCTTATC
TATTCCCCTACCCCACTTTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_k17.g1 MSMg01no191_k17.g1 CHROMAT_FILE:
MSMg01no191_k17.g1 PHD_FILE: MSMg01no191_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:22 2005
         (287 letters)



>mm_chr1_75290923_75291610
          Length = 688

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacacaacacagagaaactctgcacgtccagaccaaaacaaaac-acaaaataaaaa 59
           ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||
Sbjct: 487 caggacacaacacagagaaactctgcatgtccagaccaaaacaaaacaaaaaaataaaaa 428

                                                                       
Query: 60  caaaacccacaaacaaaaaaaattcctgagccttggcaggtaggtagaagagcaggaatt 119
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 427 caaaacccacaaacaaaaaaaattcctgagccctggcaggtaggcagaagagcaggaatt 368

                                                                       
Query: 120 gtcaggctggttggcactgctgttggtggcacccacttgggtgaggagggtggtactgag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtcaggctggttggcactgctgttggtggcacccacttgggtgaggagggtggtactgag 308

                                                                       
Query: 180 ccaggcccaggaagactggagcaacgcatctgattctgtcccctgctgccaagcacctgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccaggcccaggaagactggagcaacgcatctgattctgtcccctgctgccaagcacctgg 248

                                                          
Query: 240 agatgtgaaaagtgtgattgggattttgtcagctcccaccaggagaa 286
           ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 247 agatgtgaaaagtgtgattgggattttatcagctcccaccacgagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)