BAC Information

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BAC

Clone NameMSMg01-192C19
Chromosome1 (Build37)
Map Location 41,588,873 - 41,667,264
singlet/doubletdoublet
Overlap genenone
Upstream geneIl18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192C19.T7 (MSMg01no192_c19.b1)MSMg01-192C19.TJ (MSMg01no192_c19.g1)
ACCAG381938AG381939
length1,3531,265
length of high quality
(start - end)		190 (42 - 231)705 (83 - 787)
definitionCHROMAT_FILE: MSMg01no192_c19.b1 PHD_FILE: MSMg01no192_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:12 2005CHROMAT_FILE: MSMg01no192_c19.g1 PHD_FILE: MSMg01no192_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,588,873 - 41,589,049)(41,666,560 - 41,667,264)
sequence
NNTTACATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTAGGCTGGGATTGGCAAAGCTCATTAGAAAACAAAATTAGGATCAAT
TGATGTATATGTGTGTGTAAGTGAATGTTTGGAGGCAAATATATGTGCAG
GTTCACAGGTATGGCACTAGCAGAGGAAAACCTTGAAGGCTGAGAAATTT
ATAAGGTAAATATTTGGGGGGGGTGGGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TTTTTTTNTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCCTT
TTTTTTTTCCCCCCCCCCCNNNNNNNNNNNNNNNNNNAAAAAAAAAAAGG
GGNGGNNNNNNNNNNNNNNGNNNNGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGNGNNAGGGGGGNNGGGGGGGNGGAAGGGNGAGAAAAAGAAAAAA
AAGAAGAAAGAAAGGGAAAAAAAGAAGAAAAAGAAAAAAAAAAGAAGAAA
GGAAAANAAAGGAAAAAGANGGAAAAGAAAAAAAAAAAAAAGAAAAAAAA
AGAAGAAAGGAAAAAGAAAAAAGAAAAAAGAAAAGAAAGAAAAAAGANAA
AAAAAAAAAAAGAAAAGAGAGGAGAGAAAAGAAAAAAAAAANAGAAAAGA
GAGAAAAAAATAGATAAAAAAAAAAAAAAAAAGAAAAGAAGAAAAAGAAA
AAAAAAAGAAAAAAAAAAAGAGAAGAAAAAAGAAGAGAAAGAAGAAAGGA
GTAAAATGAATTTTTTATTTATATATTATGAATATTTTTTATTTTTTTTG
TTTATTTTATTATTATTTATTTTTTTATATATTATTATTTTTTTATTATT
ATATTTTATATTTAATTTTTTATTAGTATTTTATATTTTTTTTTTTTATT
TTGTTATTTATTATTTTGTTGTTTTTTTTTTTTTAATTTTTTATTTTTTT
ATTATATTTTTTTTTTTATTTGTATATTTTATTTTTTATTTATATTTTTT
TTATTAATATTATTTTTGATATTATTATTTATTTTTATTTTTTTTTATTT
TTTTATTTTATATGTTTTTTTTAATTTTAATTGATTATTATTTTATTTTA
TTTATAAATTATTATTAGTTANTTTTAAATTATTTTTGATTATATATTTA
TATTTTATTTTTGTTTTATATTATTTATTATATATTTTAATTTTTTTATT
GTG

CCCTTTATTTTNNAAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGAGATGGTACCACTGTGATA
CTTTTGATAGGGTTCTCCCTGGTCAGGGTGGGAAGGATTAGAGAAGATTG
AGAGTGATTATTGTATTCCCCCAGCTTGAGATAGAGGTATCTCGATAACT
GGAAGAAACCATCAGTAAATGAGACCACAAAGATCTGTGCTCATTAGTGA
AGGAATTGCATCCTGTAGAACTTGGGACTTCCTGAGGGAAACTTAATGCT
TATTTCAACTTTCCAACTGGTGATGGTAGTGACAGATTTATGAATAAATA
GGTTAGAAATGGTTTAAAAAGTGAAACCCATAGTTGAAACTAGGGTTATA
GGAAGTATTAACATTATAAGTGTAAGGATTATTAAGAAAACAACCTAAAG
CAAATTGTAGCGTTTTTTAAGATTCTCCACAAAGCCTTGCAATAGGGCTG
AGCTGAGTCTGACATGAAATGAACTAACATAGAGAGATTGAATATTATAC
GACAATCACAACCAGGAGCTCTTTGACACAGAATCCTGTTAATTAAAAGA
TGAGCCATAAATAGGCCTTTAAACATTAATTCAGGGAACTGGGGGAAGGC
TCAGTGATAAAGTGTTTGCCATGAAGGCATAAAGACCAGGGATTGGATCA
TCAATACTCACATAGACGCCTGATGAGCATGGAAGCCTGTCTGTATCCCA
GCTCTGCAGAGGAAGAGACAGAGAAGACCCCAGGCAACCTGGCCAGCTAG
ACTAACTAAATGCATGAGCTCTGAGTTCAATAAGAGATACTGTCTCAGTA
AACAGAAAGGAAAATGACGGAGGAATGAGATATCATTTTCTGACCTCCCC
ATGAAGGGTGCCACCTACCCCCCAATATTCCTCACACCCTCTTACACCCT
CCTCCCTTTTTTTCCCCTTTTTTTGTACACTCTTCTCACTTTCCTTCACT
TGTTCCCTTTTTCCCCCCCCTTACCCCTTGGTTTCCCTCCCTCCCTTTTT
TCCTGTGCCTGGTTTATTTTACCCTATTGGGTATCATCTTCTCTTTCCTT
TTTTTTTTATCTACCTCTTAATTTTATTTTATAAATCCCCCCCTCTTTAT
AAATTTTGAGTTTTTCTTTGTTTTGGAATGTTAATAATAATCCTTTTCCC
TCCCTTCTTCTTTTTTTTTTTTATATACACTCATTCCTGTTTTTTTTGTG
TCTTTTGCAATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_c19.b1 MSMg01no192_c19.b1 CHROMAT_FILE:
MSMg01no192_c19.b1 PHD_FILE: MSMg01no192_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:12 2005
         (190 letters)



>mm_chr1_41588663_41589252
          Length = 590

 Score =  304 bits (157), Expect = 3e-87
 Identities = 172/177 (97%)
 Strand = Plus / Plus

                                                                       
Query: 11  attaggctgggattggcaaagctcattagaaaacaaaattaggatcaattgatgtatatg 70
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 attaggctgggattggtaaagctcattagaaaacaaaattaggatcaattgatgtatatg 270

                                                                       
Query: 71  tgtgtgtaagtgaatgtttggaggcaaatatatgtgcaggttcacaggtatggcactagc 130
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 271 tgtgtgtaagtgaatgtttggaggcaagtatatgtgcaggttcacaggtatggcactagc 330

                                                                    
Query: 131 agaggaaaaccttgaaggctgagaaatttataaggtaaatatttggggggggtgggg 187
           ||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 331 agaggaaaaccttaaaggctgagaaatttataaggtaaatatttttggggggtgggg 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no192_c19.g1 MSMg01no192_c19.g1 CHROMAT_FILE:
MSMg01no192_c19.g1 PHD_FILE: MSMg01no192_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:12 2005
         (705 letters)



>mm_chr1_41666513_41667617
          Length = 1105

 Score = 1340 bits (693), Expect = 0.0
 Identities = 702/705 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatggtaccactgtgatacttttgatagggttctccctggtcagggtgggaaggattaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gatggtaccactgtgatacttttgatagggttctccctggtcagggtgggaaggattaga 693

                                                                       
Query: 61  gaagattgagagtgattattgtattcccccagcttgagatagaggtatctcgataactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaagattgagagtgattattgtattcccccagcttgagatagaggtatctcgataactgg 633

                                                                       
Query: 121 aagaaaccatcagtaaatgagaccacaaagatctgtgctcattagtgaaggaattgcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aagaaaccatcagtaaatgagaccacaaagatctgtgctcattagtgaaggaattgcatc 573

                                                                       
Query: 181 ctgtagaacttgggacttcctgagggaaacttaatgcttatttcaactttccaactggtg 240
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctgtacaacttgggacttcctgaaggaaacttaatgcttatttcaactttccaactggtg 513

                                                                       
Query: 241 atggtagtgacagatttatgaataaataggttagaaatggtttaaaaagtgaaacccata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atggtagtgacagatttatgaataaataggttagaaatggtttaaaaagtgaaacccata 453

                                                                       
Query: 301 gttgaaactagggttataggaagtattaacattataagtgtaaggattattaagaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gttgaaactagggttataggaagtattaacattataagtgtaaggattattaagaaaaca 393

                                                                       
Query: 361 acctaaagcaaattgtagcgttttttaagattctccacaaagccttgcaatagggctgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acctaaagcaaattgtagcgttttttaagattctccacaaagccttgcaatagggctgag 333

                                                                       
Query: 421 ctgagtctgacatgaaatgaactaacatagagagattgaatattatacgacaatcacaac 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgagtctgacatgaagtgaactaacatagagagattgaatattatacgacaatcacaac 273

                                                                       
Query: 481 caggagctctttgacacagaatcctgttaattaaaagatgagccataaataggcctttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 caggagctctttgacacagaatcctgttaattaaaagatgagccataaataggcctttaa 213

                                                                       
Query: 541 acattaattcagggaactgggggaaggctcagtgataaagtgtttgccatgaaggcataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 acattaattcagggaactgggggaaggctcagtgataaagtgtttgccatgaaggcataa 153

                                                                       
Query: 601 agaccagggattggatcatcaatactcacatagacgcctgatgagcatggaagcctgtct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 agaccagggattggatcatcaatactcacatagacgcctgatgagcatggaagcctgtct 93

                                                        
Query: 661 gtatcccagctctgcagaggaagagacagagaagaccccaggcaa 705
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  gtatcccagctctgcagaggaagagacagagaagaccccaggcaa 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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