BAC Information

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BAC

Clone NameMSMg01-192D23
Chromosome1 (Build37)
Map Location 114,945,887 - 114,946,263
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192D23.T7 (MSMg01no192_d23.b1)MSMg01-192D23.TJ (MSMg01no192_d23.g1)
ACCAG381989AG381990
length1,1881,208
length of high quality
(start - end)
406 (42 - 447)385 (67 - 451)
definitionCHROMAT_FILE: MSMg01no192_d23.b1 PHD_FILE: MSMg01no192_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:21 2005CHROMAT_FILE: MSMg01no192_d23.g1 PHD_FILE: MSMg01no192_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTGCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGTTCTTAATATCCAAGTAGTACTCTATTGTGTAAATGTACCACATT
TTCTATAACTGTTCCTCTGTTGAAAAACATCTGAGTTCTTTCCAGCTTCT
GGCTCTTACATAGAAAGCTGCTATGAATATAGCGGAGCATGTGCCCTTGT
ATATGTTGGAATATCTTTTGGGTATATGCTTAGGAGTTGTATAGTTGGGT
CCTCAGATAATACTATGTCCAATTTTCTGAGGAACCTCTAGGCTGATTTC
CAGACTGATTGTACCAGTTTGCAATCCCACCAAAAATGGAGGAGTATTCT
ATTGCTCTCTCTATCACATCATGGCCAGCATCTCCTGGAACCTGAGTATA
GTTAGCAATTCTGACTGGTGTGAGGTGTAATATCAGGGTTTTTTTTATTT
TTTTTTCTCCCCCCACTAAGGATGTGGAACATTTCAAAAAAAAGCTTCTC
AACCATTTGATGTTCTTCAGTTGAGCATTCTTTTTTAGCTGTGTACCCCA
TTTTTAATAGGGTTATTTGGTTCTCTGGAATTTAACTTCTTGACTTCTTT
GTATGTAATGGATATTATCTCTCTATCAACTGTAGGGTTGATAACAATAT
TTCCCCAATCTGTTGGTTGCCACTTTGTCCTATTGACAGTGTCCCTTGCC
TTACAGAAGCTTTTTAATTTTATGAGGTCCCATTTGTCTATTGTTAATCT
TAGAGCATAAGCCATTGGTGTTCTGTTCAGGAAATTTTACCCTATGCTCA
TGTGATCAAGCACTACCCCACTTTTTTCTCTATTCGTTTCATGTTATCTC
ATTTTATGTGGAGGTCCTTGAGTCACTTGTACTTGAACTTTTGTTAAGGT
AAAAAAAATTAGTTCCTTTTGATTCTTCCATAGGTTACTTGCCTATTGTA
TCTCTTCCTTCTTTTTAAATGGTTTTCCCCCCTCCCTCCCCATATGTATT
GTCTTTTCCTCTTTTCCTCAATTTCCTCTTCCTACTTTTGTGTGTCACTT
TATTCTTTCTTTTTTTTATCCTCTTTTTTGCCTTTCATCTATTACTTTCA
CATATATCTTCTTCTCCTTTCTTTCTTTTTCTGCATCCTTTAACTTCGTT
TTTCCTCCTTTATCCTTTCTCTATCTTTTTATCTTCTA
NNNTTTTGAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTATAGGATCACCAAGCTAGACTTTGTTCCAT
TTGTTGTCTTTAAGTTCCCTTTCAAGGGTGAGTGGAGGCATGTCTTCTTT
TCAAACAAAGTCTCTCATGTACCAGGGCATCCATACTCAAAAGATTACTA
TTGAGGCAATTCTTGAAAGATGCTATTCTGATTCCTATTTTGATATAAGA
TGCTTTCTTTCTGACACTCTCTGACATTCACTACAGGGGCATTACCGCAG
ACTGTATTTTGGTATTTGTACTTTCAGTTTCAATAAGCATGGGGTGAAAA
AAAAGTTTTTGTTTCATAAAGTTAGGCTTATCTCATCTATTTTACATTTT
CCATGAAACCCACACATTCTACTTGTCTCATAATTTGTTTTCTGTTCTTT
TTTTTTCCCCCCCACATCCTTCTCTTATAGCATTTAAAATACAATTTAGT
ACCTACAATGATTTACCAATATACATATTTCTTTCTGGTTGATTTACTTG
TTCATGAATAGTGCTGACTTTTGCCTACAGTCTTGGCTTAACTATTAAAG
GTATTCACATTTATTCTTAGCCATGATTTCATTTCTGTGGTAGTGTTATG
GATACTGTATTAATAACTTTTATTATTGCTATGACCAAGAACATAACTAC
TTCAGGAACTAGATTACTTAGCTAATATTTTTAAGGTATATTATTGTGGT
AGGAAATCTTTGGGGAGAGTGGAACAAGAATATGATGCTACTTAATCATT
TGTGAGTAAGAAAGAAATAGAAATGCACAGGAAGTGGTACTAGGTTCCAC
AGTCAAGTTTCCTTTCCACAATCTTAAGATACACAGGACCATTTTCTAAT
GACCAGGTATTCAAACACTAGCTTGTGCAGGGTTTATTAAAAAGATTTAT
TATTAAGGGGAATTCTCCCCGCCCTTTCTTGTTCTGAGAACAAAAACCTC
CTTGGGAGGACCCCTAAAAAAGACCCTTTGGAAATCCAAAGGGTTTTTGT
TTTCTTTTGAGGAAAACAAATTATGTTTTTCTTACTTATCCTTCAGATTT
TCCCCGGGTATAAACTCTCAACCCCACAAGGATTAGTTAGGTAAACCAAG
ATTTTCTTCCTCTTTGTTAAAAAGAAAATACCTTTTTGGCTTTTCTCCTA
ATAATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_d23.g1 MSMg01no192_d23.g1 CHROMAT_FILE:
MSMg01no192_d23.g1 PHD_FILE: MSMg01no192_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:21 2005
         (385 letters)



>mm_chr1_114945680_114946463
          Length = 784

 Score =  632 bits (327), Expect = 0.0
 Identities = 366/383 (95%), Gaps = 11/383 (2%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggatcaccaagctagactttgttccatttgttgtctt-taagttccctttcaagggtgag 66
           |||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct: 584 ggatcaccaagctagactttgttccatttgttgt-ttgtaggttccctttcaaggttgag 526

                                                                       
Query: 67  tggaggcatgtcttcttttcaaacaaagtctctcatgtaccagggcatccatactcaaaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tggaggcatgtcttcttttcaaacaaagtctctcatgtaccagggcatccatactcaaaa 466

                                                                       
Query: 127 gattactattgaggcaattcttgaaagatgctattctgattcctattttgatataagatg 186
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 465 gattactattgaggcaattcttgaaagaggctattctgattcttattttgatataagatg 406

                                                                       
Query: 187 ctttctttctgacactctctgacattcactacaggggcattaccgcagactgtattttgg 246
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 405 ctttctttctgacactctctgacattcactacaggggcattaccacagactgtattttgg 346

                                                                       
Query: 247 tatttgtactttcagtttcaataagcatggggtgaaaaaaaagtttttgtttcataaagt 306
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 345 tatttgtactttcagtttcaataagcatggggtgaaaaaaa-gtttttgtttcataaagt 287

                                                                       
Query: 307 taggcttatctcatctattttacatttt----ccatgaaacccacacattctacttgtct 362
           ||||||||||||||||||||||||        |||||||||||||||||||||| |||||
Sbjct: 286 taggcttatctcatctattttaca----gcagccatgaaacccacacattctacatgtct 231

                                  
Query: 363 cataatttgttttctgttctttt 385
           |||||||||||||||||||||||
Sbjct: 230 cataatttgttttctgttctttt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 784
Length adjustment: 9
Effective length of query: 376
Effective length of database: 775
Effective search space:   291400
Effective search space used:   291400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)