BAC Information

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BAC

Clone NameMSMg01-192F08
Chromosome1 (Build37)
Map Location 170,592,642 - 170,593,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192F08.T7 (MSMg01no192_f08.b1)MSMg01-192F08.TJ (MSMg01no192_f08.g1)
ACCAG382045AG382046
length1,2411,240
length of high quality
(start - end)
421 (29 - 449)374 (75 - 448)
definitionCHROMAT_FILE: MSMg01no192_f08.b1 PHD_FILE: MSMg01no192_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:32 2005CHROMAT_FILE: MSMg01no192_f08.g1 PHD_FILE: MSMg01no192_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGACACTGGGGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
TAATATCAGAAAATAACATCTGGGACATTGCTACCAGTTATGGAGAAATG
CAGTGGATTATCAGAGATCATGGTAGACAATAACTCACCAAAATGTGAAT
AAGGTAGATAAAATGGACAATCTAAGAGACACAAAACCTACCGATAGAGA
ATCACAAGAGAAATAAATTTGAACAGATGTATGACTAAGGAGATTAAAGC
TATAAGAAAACATCTCCAAATCACAAATAACTCACACAAAATGTACTCAC
TGATAAGTGGATATTAGCTCAGAAACTTAGACTACCCAAGATACAAGATA
CAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGTA
CACTTGGCCCCTTCTTAGAATTGGGAACAAAACACCCATAGAAGGAGTTT
TTTTTTCCCCCCCCGGAGCTGAGACGAATAGATGGACCAAAAAGAGACTA
CCATATCCGGGGATCCATCCCATAATCAGCTTCCAAACACTGACACCATT
GCATACACTAGCAAGATTTTACTGAAAGGACCCAGATATAGCTGTCTCTT
GTGAGACTACACTGGGGCCTAGCAAACACAGAAGTGGAGGCTCGCAGTCA
GCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACC
CAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAAC
TAAGCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGAT
GGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTT
TATATGCCCCAATACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTT
GGTAGGTCATTTCTTTTCCTCTTCTTCTTTTTTCTTACTTCTTCCTCTCT
CTTTTTTTTTTATTTCTTCTTTTTTCTTTTTTACTTCTATTTTTCTCTTT
TTTCATCTTTCTTCTATCCTTCATTATCTCCTTTCTTTTTATTCCTCCTC
TATTTCTCCTTATCCTCTCTCCTCTTTCACTTTTATTCTCTATCTCTTCT
TTTTATCTGCTTCTTCTCTTTCCTTTTCTCTCCTTTCATATCCTTTCTCT
TTTCTTCGCCTTCCTTTTTACACTTTCTCTTCTTTCTCTTTTTCAATCTG
ATCCTCTTTCTTTACCTTCTTTCCTTTCCTCTCTTTTCTAT
NNNGGGTCATGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCTAAATGAAGGGAGCAGGGAGGG
GGTCCTCCTGCTGGCAGAACGTTGAAAGCAAGATCCATGACATAGGCCTG
CGAGGAAGATTTTGCTCGGGAAATGCATGGGTTTCCGTATTCTGCACACC
AAGCCTGTCTTCTAATGACAGCCTTGGGAGTCAGACATTTCTAAGTGCTA
ATTAGAGGTGTTGATTATCGTGGTAACCCTGTGGGGGCTCAACCCAAGCC
TGAGAGCAAAAGCCACAGATATAATAAAGATTGTTACAGTGGCTCCCGGT
GTCACATGAACATCAATACTGGATTGTCAATGCTCAGGCGCAATCCATTC
TGGGACTCCAGCTATTGCAATGACGGAGTCCCAGGGTGATACACGTTTTT
TTTTCCCCCCCCCCAATATGCAGTTCTGATGGAGAAAAAAATACTTCATC
CTAATCAATCAGGAGAAGAAGAAGAAAAAAAAACAAAAAAACAACTCACC
AGAACTCAGATATACAGAGATTGACTTATGAGAGGATTTCACTAACACAT
GAGCAAAGGCTGTGGCGATGGGACACACAAAACCAACTTACGGCCAGAAA
TAAATGAGCTGCTTAGACGCTCGCAGTCTGCAGCGTCTCCATTTATGTCC
TGACTCACTTATGTTTTGCCATGCGCACATGTGACTTCTCTCGTGGATGA
AAAATTTGGGCTATTGATTTCTTCTCACTTTACTTCCATATCCATTGACA
GTTCATGACTACTTTGAAAAAAAAGATTGGGAATGAGAGACAGAAGTCTT
GAAAAGGAGTCTTAATTTTGAGGGGTCGGTAGTAACTAAAAAGCAGGTTT
TTAGGGTCAAAAAAGTTAAAGGACACCCCTTCTTACCAAGGTCTGGAAAC
TTTTTCCTCGCCCCCCCCATTTAAATAATATATTACCCTTATTTTCTTTG
GTCCTAATGAAAATATTCCTTCCCCCTTGGAATACTTTTATTGTGTCCCT
GTATAATTCTATCCCCTGTATGTCTAAAATCCCCCTTTGGGATATTCATC
ATTAATAAATTTAACTCCTTCTTCTAATATTATATATATTGTGTTTGTTG
TTCTATTATNCATTTTCTCCCTATACATCTCCTTTGTACTTCTTTATCAT
ATTACTCACAATTCTACTTTTATGTTGCTATCCCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_f08.g1 MSMg01no192_f08.g1 CHROMAT_FILE:
MSMg01no192_f08.g1 PHD_FILE: MSMg01no192_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:32 2005
         (374 letters)



>mm_chr1_170592442_170593215
          Length = 774

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctaaatgaagggagcagggagggggtcctcctgctggcagaacgttgaaagcaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttcctaaatgaagggagcagggagggggtcctcctgctggcagaacgttgaaagcaagat 512

                                                                       
Query: 61  ccatgacataggcctgcgaggaagattttgctcgggaaatgcatgggtttccgtattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccatgacataggcctgcgaggaagattttgctcgggaaatgcatgggtttccgtattctg 452

                                                                       
Query: 121 cacaccaagcctgtcttctaatgacagccttgggagtcagacatttctaagtgctaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cacaccaagcctgtcttctaatgacagccttgggagtcagacatttctaagtgctaatta 392

                                                                       
Query: 181 gaggtgttgattatcgtggtaaccctgtgggggctcaacccaagcctgagagcaaaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaggtgttgattatcgtggtaaccctgtgggggctcaacccaagcctgagagcaaaagcc 332

                                                                       
Query: 241 acagatataataaagattgttacagtggctcccggtgtcacatgaacatcaatactggat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acagataaaataaagattgttacagtggctcccggtgtcacatgaacatcaatactggat 272

                                                                       
Query: 301 tgtcaatgctcaggcgcaatccattctgggactccagctattgcaatgacggagtcccag 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgtcaatgctcaggcgcaatccaatctgggactccagctattgcaatgacggagtcccag 212

                      
Query: 361 ggtgatacacg 371
           |||||||||||
Sbjct: 211 ggtgatacacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)