BAC Information

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BAC

Clone NameMSMg01-192I06
Chromosome1 (Build37)
Map Location 165,019,804 - 165,020,133
singlet/doubletsinglet
Overlap genenone
Upstream geneDnm3, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik
Downstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192I06.T7 (MSMg01no192_i06.b1)MSMg01-192I06.TJ (MSMg01no192_i06.g1)
ACCAG382167AG382168
length1,2881,300
length of high quality
(start - end)
412 (42 - 453)372 (70 - 441)
definitionCHROMAT_FILE: MSMg01no192_i06.b1 PHD_FILE: MSMg01no192_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:59 2005CHROMAT_FILE: MSMg01no192_i06.g1 PHD_FILE: MSMg01no192_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGACATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTGAAAACAGTGGTTCCTTGCTAAATTATTTGGCCTGTTACCATCTTG
TTCTTTCTAGCCCAACAAAAGACTTAACAACTAACAACTTCACAACCAAA
GCACAAGGGGAGGACAAAAGGGTTGTATCTTCCTACCAGTTCTCCCAGGA
AGCCAAGTTATTTGGCCTGTCTACCTTTCCCCTGAGGAAGCAACATTCAC
ATCATTTGTCTTTATTTGCTTTGACTCAGAGCTCCTTCCATGCAATAGCT
CTGTTGTCACAGCATTTGTTAAAGCAAGACATGAGAACTCCTTGATTCAG
CAATGGCCTTGGGAGACATGACCAAGTGCATCTAGTGAGCAACTGACCAA
ACACAAAAGTCAAAGGATGGACTGTCCAGAGGGGATTGTGAAACTGACAG
ACTCTTGTTTATCCCCCAGCTACGTACAGGTGCAGGGCTATGCACATGTC
AAAGACATGCCTGAGAAGGCCCAGGCTCTCACTACATTCTGATCTTGTGA
CTCTGCAACCAATAAGGAAAAGTCAAAGCAGTTATGAACTGCAGGAAATT
GTAAAGACATTTGAACATCATAGACAGACACACATGCACATATCTACATA
CACACATGCATACCCACACTCACACACTTACACACACACATACAAACACA
AACACAGACACACAAATACACACATACAAACATGCACACTGAGCATCTTA
ATGAAGGCTGGAAGACTAGNTATTTTCAATCCTTTTAGTAAGTCTGCCTA
ATATTAATAGAGGTCTACTGAAGTGAAGAGAGAACTCTGTAGTCACATAT
GACAAATACTTTTGAATCAGCAGAATAAAGTGAGGGGATTTGCTACACTG
ATAAAATTAAAATCCCTCTACCAAAACCGGCAGAATAACGACAAACACCG
AACACTGCTTATAATCTTTTAAAATCCACGGTTTCGGGAAAATTCCCTGG
GGTGGAAAGGAAAAAAAATTTCTTCCCCCAAACCGATGGGTGGGGGGGGG
AGGTTAAGCTAGTAAACAGACTTTGGATGGGGCAATACAAAACTCTTCTT
CTTCTTTTTTATTTTTTGACCATAATCTTTCTTGTATTCTTTTTGTAATC
ATCTCATATTTACCCTATACCACTCTATGATCTTCTTCTTTCTCTCTTCT
CTACATAATTTACAAATGCTTTCCTAATCTTCNTTTATACTATAACCCTA
CGGTATAATCTCTTCCCTACCTCTATCTATTATTTGTC
NNNGGGTGACGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCTTAAAGAGATAGCCTCGCTGGCCATCTA
TCCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTATGC
TTGTTATAGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTAGGTGCAGA
GTGTGCGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCTGCAGTGG
AGGCGGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAATTATG
CTGTGATATGCCGTGGGGTGCGAGGCTAAGCACTGCACAGAGGATAGCTT
GCTGTTGGCATCCTGTGGAAGGCATGTCTGATTGCATGAAGGTTCATTGT
CCTAGTTCCCTTCCCCCAGGAAAAACGACACGGGAGCTGGCCAAGACTTT
TTTTTTTCCCCCCCCCCAAGAGATGCCTTCCCCCCCCCCAAAAAAGGGGG
GCGCNCTGGGGTTCTGACCTCTACCTTTACCCATGAGGCTTGCTTGCAGC
AATTAAGATCTGGCCCTAGATTATCCCCATCCTCGGCCTTTTTGATTCCC
CGCCCCAAGCCTAACTCCCTCTCCCCATGTGTGGCTTGCCCTCATCTCAT
AGGCACCCCGCGCTTTCCACTCCTGGCCATGTCCCCCTTCCTTACTACGT
CTTCTCACCTATTGCTTCTTCTCCCCCCTCCCCCCTCTCCATCCTCCCTC
ACTGTTTCCTCCTCTTTTCTCCCCTTCTCCTTCTCTTCACCCCCTCACTC
CTCTCTTTCTCTCCCCTCCCTCTTCCTTCTCCTCCTCCTCACCCCTCCTT
CTCCTCCTCCATTCCTCTCCCTTGCCCCTCCACTCCCTCCCTCTCCCTCC
CCTCCTTCCCTCCCTTCCCCCCATTCTCTCTTCCCTCTTCTTCCTCCCCC
CCCCTTCTTCCCCCCCCCCTCCCTCCCTCCCCTCCTCTTCCCTCCCCCTC
CTCCCTTCTCTTTCTCCCTCGTCCTTTCTTCTCCCCTTCTCTCCTTCCCC
TCCCCTCCCTCTCCCCTCCTTCTCTCTTCTCTGCCTTCTCCTTCTTCCTC
CCTCTCTCCCCCTCTCCCTCTCTCCTTCTTCCCTCTCCTCCTCCCTTCCC
TCTTCCCCCCCACCTCCCTCTACCCTCCTTTCCCTTCCTCTCCCCGTTCC
TCTCTCCTCTCTCTTTCCTCCTTCTTTCCTCTTCTCTTCCTCTTCTACCT
CTCTGTTCCTTCCTTTCTTCTCTTCCCTCCTTTCTCTCTCCTCCCTCATG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_i06.b1 MSMg01no192_i06.b1 CHROMAT_FILE:
MSMg01no192_i06.b1 PHD_FILE: MSMg01no192_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:59 2005
         (412 letters)



>mm_chr1_165019322_165020133
          Length = 812

 Score =  630 bits (326), Expect = 0.0
 Identities = 329/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  agacttaacaactaacaacttcacaaccaaagcacaaggggaggacaaaagggttgtatc 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 agacttaacaactaacaacttcacaaccaaagcacaaggggaggacaaaagggttgtatc 753

                                                                       
Query: 139 ttcctaccagttctcccaggaagccaagttatttggcctgtctacctttcccctgaggaa 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttcctaccagttctcccaggaagccaagttatttggcctgtctacctttcccctgaggaa 693

                                                                       
Query: 199 gcaacattcacatcatttgtctttatttgctttgactcagagctccttccatgcaatagc 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gcaacattcacatcatttgtctttatttgctttgactcagagctccttccatgcaatagc 633

                                                                       
Query: 259 tctgttgtcacagcatttgttaaagcaagacatgagaactccttgattcagcaatggcct 318
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 632 tctgttgtcacagcatttgttaaagcaagccatgagaactccttgattcagcaatggcct 573

                                                                       
Query: 319 tgggagacatgaccaagtgcatctagtgagcaactgaccaaacacaaaagtcaaaggatg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgggagacatgaccaagtgcatctagtgagcaactgaccaaacacaaaagtcaaaggatg 513

                                         
Query: 379 gactgtccagaggggattgtgaaactgaca 408
           ||||||||||||||||||||||||||||||
Sbjct: 512 gactgtccagaggggattgtgaaactgaca 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)