BAC Information

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BAC

Clone NameMSMg01-193A03
Chromosome1 (Build37)
Map Location 131,611,732 - 131,612,119
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193A03.T7 (MSMg01no193_a03.b1)MSMg01-193A03.TJ (MSMg01no193_a03.g1)
ACCAG382493AG382494
length1,2071,110
length of high quality
(start - end)
414 (43 - 456)380 (72 - 451)
definitionCHROMAT_FILE: MSMg01no193_a03.b1 PHD_FILE: MSMg01no193_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:11 2005CHROMAT_FILE: MSMg01no193_a03.g1 PHD_FILE: MSMg01no193_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGAAATTCTTAGGCAAATTGATGTATCTGGAAGATATCATCCTGAAT
GATGTAACTCAATCACAAAAAAAAAAAAAAACAAAACAAACCCACACATG
ATATGCACTCACTGCTAAGTGGATATTAGCTCAGAAACGTAGACTATCCA
AGATACAATTTGCAAAACACATGAAATTCAAGAAGAAGGAAGACCAAAAT
GTGTATACTTTGCTCCTTCTTAGAATGGGGAACAAAATACCCATGGAAGG
AGTTACAAGAGAAGATTCGGGGCTGAGATGGAAGGAAGGACCATCCAGAC
GTTGCTCCACCTGGGGATCCATCCCATATACAACCACCAAACCCAGACAC
TACTGCATATGCCAGAAATGTATCTTCATTTTTAACACAGTAGTTACTAA
ATGTTTTTTTGCCCCCCCCATATGTGGATTCTGTAAATGAAAAAAGAATA
TTATTTAATGCTGATCTGAACATTTTCAATAAGCAAATAGATGTCAATTC
AGAGTATGTTATTCATATATACATATTTGTACATATATGTAATGAAATAA
GTATAAATGGACATTATATATTTTCATATGGAAATAAAAATCATGTTTAT
AATGTGCATACACACACAAACACAGATACATATGCTGCATTTTGTGAAAG
CATATTTTTATTTTAAAAGAACAGATCATTATGAATTGAATCACTTTTTC
CATGTAAATGCTTTTTTTTTATTTCTTTCCATCTTTCAAAATCCTAAGTC
TAAGAGAGAATCTTAACCTACTATTTATGGGAGCATAAACATTTTTGAAC
TTATTTTCTTTTCCTCTCATTGCCTTTGAAAATGCTGTGTGTGTGTGTGT
GCGCTGTGTGCCTCTCCCCCCCCACCCTTCTCTCCTCCCCTCCCTTTTTT
CTCTCTATTCTATCCTCTTCTTCTTTTCTCTTTCCATTTCTCTCTCCTCC
CTTCCTTTCCATCTTCTTTCTTACTTTCCCCTTCTTACTCCTCCCTTTCT
CCTTTCTTTCTTTTTATAATCTAATCATTTCTTTCTCTCCTTTCTCTTAT
CTCTCTCTCATTTTCCTCTCTCTCTTTCTCTTCCCTTCTCATTTTATTTT
CTTTCTTATTCACATTCCTCTATTCTCTCTCCCAACTTCTCCTATTCTAT
TCATCTA
NNTTTTTGACGTGTAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTCATGTTTTACTGAGGATCAAATGCAA
CCAAGTTAGAAATGGCCATCAAAATAGAATATTCCCATTGTTGTCAAAAA
TGGAAATTCATGAAATGTTATTTAGAATTAAAAAGAATTCCTCTATATGT
GTCTCTATCCATAAATATATATATATCATTACTATTCAATAAGATGAATC
ACAAACACTTAATATATAACAATAAAATACTCTACCTACATCAAATTCAA
AACCAGATAAAATAGCATAAAGGGGCCGGAGTCAAAACATAGGTTCCTTT
GGATGCTGTGCAAGAGCAATGGAGCAAAAGGATTGTGGGAGCTCTTTAAA
AAGGAATGTGACAAAGTCATTTTTAATATTGAGTTTCTGACAAACCAAGA
GATTTTTCTGTACCTGCGAAGCTTGCTCTAAAACTTTTTAAACATTCCTA
TTAGTCTTGGATTAATATAATAAAATGATGAGTGATTTCAATAGTACCAA
ATGTATATATTGCTATGGTGAATGGGTTAAACAGCCTTGAGTGTATATAA
TGAAATGATGAATGGGATAAACAAGATGAATTAACTTTCTGAGCATCTGT
ATCATACAGAAATTATATATAAGGATAGGTTATGGGGGGGATATCGAGGT
NNCNNNNCCTCNTCTTTTCTTTCTTCTCTTTTCTTCTCTTTCTCTTCCTC
TCTTCCTTCTCCCTTTTTTTTTTTTTTCTCTTTCTTCCTCTTTCTTTCCT
CTTCTTTTTCCTCTCTCTCTTCTTTCCCTTTTTTTCTTCTCCTCTCTCTT
CTCTTTCCTCTTTTTCTCTTTTTCCTTTTCCTTTTTTTCCTTTTTTTCTT
CCTCCTCTTTTTCTCTTCTTTTTTTCCTTTCTTTTTTCTCTTCTCCCTTC
TTTTTTCTTTTTTCTTTTCTCTCTCTCTCTTTCCTTCCTCTTTTTCCTTT
TCCTACTTTTTCTCCTCCTTTCTTTTCTTTTTTCCCTTCCCTTTCTTTTT
TTCTTTTTCTTTCTCCTCTCTTTCTCTTTTTACCTTCTTCTTTCCCCTTT
CCTCTTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_a03.g1 MSMg01no193_a03.g1 CHROMAT_FILE:
MSMg01no193_a03.g1 PHD_FILE: MSMg01no193_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:11 2005
         (380 letters)



>mm_chr1_131611389_131612168
          Length = 780

 Score =  708 bits (366), Expect = 0.0
 Identities = 379/388 (97%), Gaps = 8/388 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcatgttttactgaggatcaaatgcaaccaagttagaaatggccatcaaaatagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agtcatgttttactgaggatcaaatgcaaccaagttagaaatggccatcaaaatagaata 672

                                                                       
Query: 61  ttcccattgttgtcaaaaatggaaattcatgaaatgttatttagaattaaaaagaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttcccattgttgtcaaaaatggaaattcatgaaatgttatttagaattaaaaagaattcc 612

                                                                       
Query: 121 tctatatgtgtctctatccataa--------atatatatatatcattactattcaataag 172
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 611 tctatatgtgtctctatccataaatatatatatatatatatatcattactattcaataag 552

                                                                       
Query: 173 atgaatcacaaacacttaatatataacaataaaatactctacctacatcaaattcaaaac 232
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 551 atgaatcacaaacacttaatatataacaataaaatactctacctacataaaattcaaaac 492

                                                                       
Query: 233 cagataaaatagcataaaggggccggagtcaaaacataggttcctttggatgctgtgcaa 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagataaaatagcataaaggggccggagtcaaaacataggttcctttggatgctgtgcaa 432

                                                                       
Query: 293 gagcaatggagcaaaaggattgtgggagctctttaaaaaggaatgtgacaaagtcatttt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagcaatggagcaaaaggattgtgggagctctttaaaaaggaatgtgacaaagtcatttt 372

                                       
Query: 353 taatattgagtttctgacaaaccaagag 380
           ||||||||||||||||||||||||||||
Sbjct: 371 taatattgagtttctgacaaaccaagag 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)