CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTACCCGTTTTTTTTGTTTGTTTGTTTTTTGT
TTTTTGAGACAGGGTTTCTCTGTCCAGCCCTGCCTGTCCTGGAACTCACT
CTGTAGAACAGGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCC
CGAGTGCTGGGATTAAAGGGGTGTGCCACCATGCCTGGCTTGTACCCCAG
TTTTTAATGGGGTTATTTGAATTTCTGGAGTTCAGCTTCTTGAGCTCTTT
GTATTTATTGGAAATTAGTCCCCTATCAGATTTAGGATTACTAAAGATCC
TTTCCTGATCTGTTGTTGGACTTTTTGCCCTATTGACAGTATCTTTTGCC
CTACAGAAGGTTTGCCCCCCCCACAAGATCACATTTGCCAATTCTCAATC
TTACAGCACAGGCCATTGCTGCTCTGTTTCCCCTTTGTTCGCATCTTCTA
TTTTTTTCTTTACTTTCTCCCCTATAACTTTTCCGCGTCCCTGCCCTTTA
TGCGTTCCTCCCTTGCCCTTTTTATTTCCCCACCTCGCCCCCTAATACCC
CACCGTATCTCCTTCCAATCCCTTTACCCGCCTTTTGCCATCCTTTCCTT
TGCCCCCCTTCGTTTTTTTTGCTCCCCTCTCTTTGTTTCTTTTTATTTGC
TTTTTTCCCCCTTTCCCCCTCTTTTATCGCCCTTTCCTTATCTTN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTCTTCCTGCACCATACTTGT
CAGGACGCTGCCATGCCCTCACCTTGATGATAATGAATTGTTATCAGGAT
TGCTCTGGCTGAATGGGAGAGGCCAAGAGCATTGCTACCTGGGAAGGCAG
GGGTTTTCTCAAAGGAAAGTAAGAGCTGGTGGTTGAGTAAGAGAAGTGTT
GACTACAAAAGTTCTGGCCAGATGAGAAGAGGCACAAGAAATTTGTGCTC
AGAAAGAATGTGCCATTTTTCCATGGCAAAAAAAGAATACATTCAAGTGT
TTTGATATGATATATATTTCATTTTTATGACATATATTTCTTATCCACTA
GAAATTTTTAGAATCCAGCTGCTACCAAAAGTCAAATGACCCATTCACTA
CTTCTTAGCATTTTTTTTCACTATATAAGTCGTCTTTAAAACGAAAGTTT
CTCAGGGAAAAGCATACCAATCAGCTATCAGAGACCACAATGGCCAATTC
TGAGAACACGTACTATGTATTTCACTCATGATTATTATGAGGATTTCTGC
CGCTAAAGCATTAATAAGGCGATTGGCACATGGAGCACACCTAACAGACT
TTATCATATTGCTGCTGCTAAGTGGTCATGGGAGTTTATTTGAGCTCTAT
TCACCCAGGGTCTATGCTATTAAATCN

Query= MSMg01no193_h03.g1 MSMg01no193_h03.g1 CHROMAT_FILE:
MSMg01no193_h03.g1 PHD_FILE: MSMg01no193_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:52 2005
         (478 letters)



>mm_chr1_161090811_161091689
          Length = 879

 Score =  903 bits (467), Expect = 0.0
 Identities = 476/479 (99%), Gaps = 1/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagctcttcctgcaccatacttgtcaggacgctgccatgccctcaccttgatgataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctcttcctgcaccatacttgtcaggacgctgccatgccctcaccttgatgataatg 260

                                                                       
Query: 61  aattgttatcaggattgctctggctgaatgggagaggccaagagcattgctacctgggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aattgttatcaggattgctctggctgaatgggagaggccaagagcattgttacctgggaa 320

                                                                       
Query: 121 ggcaggggttttctcaaaggaaagtaagagctggtggttgagtaagagaagtgttgacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggggttttctcaaaggaaagtaagagctggtggttgagtaagagaagtgttgacta 380

                                                                       
Query: 181 caaaagttctggccagatgagaagaggcacaagaaatttgtgctcagaaagaatgtgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaagttctggccagatgagaagaggcacaagaaatttgtgctcagaaagaatgtgcca 440

                                                                       
Query: 241 tttttccatggcaaaaaaagaatacattcaagtgttttgatatgatatatatttcatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttccatggcaaaaaaagaatacattcaagtgttttgatatgatatatatttcatttt 500

                                                                       
Query: 301 tatgacatatatttcttatccactagaaatttttagaatccagctgctaccaaaagtcaa 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tatgacatatatttcttatccactagaaatttttagaatccagttgctaccaaaagtcaa 560

                                                                       
Query: 361 atgacccattcactacttcttagcatttttttt-cactatataagtcgtctttaaaacga 419
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 atgacccattcactacttcttagcatttttttttcactatataagtcgtctttaaaacga 620

                                                                      
Query: 420 aagtttctcagggaaaagcataccaatcagctatcagagaccacaatggccaattctga 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtttctcagggaaaagcataccaatcagctatcagagaccacaatggccaattctga 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 879
Length adjustment: 10
Effective length of query: 468
Effective length of database: 869
Effective search space:   406692
Effective search space used:   406692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)