Query= MSMg01no193_k13.b1 MSMg01no193_k13.b1 CHROMAT_FILE:
MSMg01no193_k13.b1 PHD_FILE: MSMg01no193_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:12 2005
(365 letters)
>mm_chr1_41765757_41766523
Length = 767
Score = 644 bits (333), Expect = 0.0
Identities = 346/351 (98%), Gaps = 2/351 (0%)
Strand = Plus / Plus
Query: 17 gaattctcctgtctcccctcttaccttaatgttagagcactggaattacaatcttcagac 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctcctgtctcccctcttaccttaatgttagagcactggaattacaatcttcagac 276
Query: 77 atcatgcccatccgtatgcagattctagagaatctgactcagatctttcattgcatggcc 136
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atcatgcccatccgtatgtagattctagagaatctgactcagatctttcattgcatggcc 336
Query: 137 aaaccagcatcccctggtaccagtgcttgcatctcaagagtcatcatcagcccgatctta 196
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 337 aaaccagcatcccctggtaccagtgcttgcatctcaagagtcatcatcggcccgatctta 396
Query: 197 gctatttcaccttcatgtcaggacctaaacatccctggcttttacaatgctctctctatc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gctatttcaccttcatgtcaggacctaaacatccctggcttttacaatgctctctctatc 456
Query: 257 taggaaccactttttaactttgactgatgtacacagtactcatggcctttttttatggga 316
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taggtaccactttttaactttgactgatgtacacagtactcatggcctttttttatggga 516
Query: 317 tctgtgaattgcacagcaataaaaaaa--tctacaccttaataaaatagtt 365
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 517 tctgtgaattgcacagcaataaaaaaaaatctacaccttaataaaatagtt 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space: 269848
Effective search space used: 269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_k13.g1 MSMg01no193_k13.g1 CHROMAT_FILE:
MSMg01no193_k13.g1 PHD_FILE: MSMg01no193_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:13 2005
(386 letters)
>mm_chr1_41882205_41882991
Length = 787
Score = 642 bits (332), Expect = 0.0
Identities = 361/372 (97%), Gaps = 5/372 (1%)
Strand = Plus / Minus
Query: 15 aaataaaccctaagtaagacactggtagaatttccatctccccaggatggtctggattaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aaataaaccctaagtaagacactggtagaatttccatctccccaggatggtctggattaa 728
Query: 75 caggacttgacatgtgtattcctaaattattttttttctaaaattgcataaacatcaaga 134
||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 727 caggacttgacatgtgtgttcctaaatta-tttttttctaaaattgtataaacatcaaga 669
Query: 135 gagatcaaaaagttcaagtaacaaacagcaaaaaataaataattaaataaataaaaataa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gagatcaaaaagttcaagtaacaaacagcaaaaaataaataattaaataaataaaaataa 609
Query: 195 aaattac---aaaaaaaagtgaaaaagaggagaaagacactgagtctgttgaggatccca 251
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaattacaaaaaaaaaaagtgaaaaagaggagaaagacactgagtctgttgaggatccca 549
Query: 252 aagacaaataatttaaatctatttttatttaagtaaaacaaaacaaaaaaaaaggatgta 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aagacaaataatttaaatctatttttatttaagtaaaacaaaacaaaaaaaaaggatgta 489
Query: 312 aaacaaagagtttgttgttcttttctcaggagtaaaaggagg-ccgttaagaaattgttt 370
||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct: 488 aaacaaagagtttgttgttctaagctcaggagtaaaagggggcccgttaagaaattgttt 429
Query: 371 tctttaattttt 382
||||||||||||
Sbjct: 428 tctttaattttt 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 787
Length adjustment: 9
Effective length of query: 377
Effective length of database: 778
Effective search space: 293306
Effective search space used: 293306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
