BAC Information

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BAC

Clone NameMSMg01-193P02
Chromosome1 (Build37)
Map Location 110,512,935 - 110,513,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640
Downstream geneEG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193P02.T7 (MSMg01no193_p02.b1)MSMg01-193P02.TJ (MSMg01no193_p02.g1)
ACCAG383047AG383048
length726761
length of high quality
(start - end)
262 (46 - 307)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no193_p02.b1 PHD_FILE: MSMg01no193_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:40 2005CHROMAT_FILE: MSMg01no193_p02.g1 PHD_FILE: MSMg01no193_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCTCTTGTTCTCAAGTTATATTAGTTCTTTCTGCCAAGCCCTC
TAAGTATTCCCTTCAAGCCCATCTCCATTAACATGTTTCAGCTGCCAACC
TGTAAAAGCAGTTTCGACCAGATACCTCTAGTGTCCATACTCTTCTGTGA
TTCAAGAAGGAGACTTTTACTTTCTTCTTGTACTCCATTATGGTCTCTCC
AAAATCATTGAGTCTTGTAGCAGCCTAACTGCATTGGTTCCTCCTCCAAC
CTAATCCAATTTTCACAAACATCCGTGCTTCTTGGTGTGGACCTGGTTCT
CCTAGCTATTCCCCAAAGTCCTGTGCAGTATTTTTACTAGCCACTTNNCA
ATTTCATTCTGTCATCCACTAATGTGCATAAGTACTCCTAACTAGAGGAT
TTTCTTTTACCAAGGTATATAGAATCCAAGGATTATAACTATCGCCCAGA
AAAAAGGAACCCCACCCCCCCCANTATCGATATTTTTAAAAAGGAAAACC
TTCCTAAATATAAAAACCACGAAACCCTAAATCTCTGGGGGTGTGCTTTT
ATCATTAAAAACACTACACCCGGACTGTTTGTTTTCTTTTGCTCGTCCCA
ACCTTGCTCCTGAGAATATCATAATGTATAAAAAATACTTCCTCCACTTT
TGTGTCGTAAAGCAACAACAACACAA
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAACTGAGGAAACTTGAATGGCT
GAGAAGCACCAAAACACAAAACGAAACACAACAAAACAAAACAAAACAAA
ACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA
AAATGTTCAACACCCTTAATCATCAGGGAAATGACCCTGAGAATTCCCCC
AGTTAGAATGGCGAAGTTCAGAGAACCGGACAGCTTCTGGGACGGGCAGA
AGCACAGAGCCGCTGAGGCAGCACCCTTGGCGGTCCACAGACAGCCGGCC
ACCATCCGGACCAGAGGACAGTTGTCCGCCCGCCTTGTGAGGCGGCCTCA
GCCTCAGCAGCAGCGGTCGCCATCTTGGTTCCGGGACTCAGCAGAACTTA
GGAAATTAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACTGGACAGCTT
CTGGGACGGGCAGATGCACAGAGCCGCTGAGGCAGCACCCTTGGCGTTCC
GCAGACAGCCGGCCACCGTCCGGACCAGAGGACAGGTGTCCACCTGGCTT
GCGAGGCGGACTCAGCCTCAGCAGCAGCGTTTGCCATCTGGGTTCCAGGA
CTCCGCGGTACCTAGGATAATAATTTGAACAGGTTATATGTTGCGCCAAA
GATCGAACAGCTTCGTTGAAATGCATAAACAAATAACCGTTGACTAATTA
CCCTTTTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_p02.b1 MSMg01no193_p02.b1 CHROMAT_FILE:
MSMg01no193_p02.b1 PHD_FILE: MSMg01no193_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:40 2005
         (262 letters)



>mm_chr1_110512731_110513389
          Length = 659

 Score =  468 bits (242), Expect = e-136
 Identities = 253/258 (98%), Gaps = 3/258 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtctcttgttctcaagttatattagttctttctgccaagccctctaagtattc 64
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtctcttg---tcaagttatattagttctttctgccaagccctctaagtattc 261

                                                                       
Query: 65  ccttcaagcccatctccattaacatgtttcagctgccaacctgtaaaagcagtttcgacc 124
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 262 ccttcaagcccatctccattaacacgtttcacctgccaacctgtaaaagcagtttcgacc 321

                                                                       
Query: 125 agatacctctagtgtccatactcttctgtgattcaagaaggagacttttactttcttctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatacctctagtgtccatactcttctgtgattcaagaaggagacttttactttcttctt 381

                                                                       
Query: 185 gtactccattatggtctctccaaaatcattgagtcttgtagcagcctaactgcattggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtactccattatggtctctccaaaatcattgagtcttgtagcagcctaactgcattggtt 441

                             
Query: 245 cctcctccaacctaatcc 262
           ||||||||||||||||||
Sbjct: 442 cctcctccaacctaatcc 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 659
Length adjustment: 9
Effective length of query: 253
Effective length of database: 650
Effective search space:   164450
Effective search space used:   164450
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)