BAC Information

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BAC

Clone NameMSMg01-194A03
Chromosome1 (Build37)
Map Location 173,796,928 - 173,797,351
singlet/doubletsinglet
Overlap geneCd84
Upstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1
Downstream geneSlamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194A03.T7 (MSMg01no194_a03.b1)MSMg01-194A03.TJ (MSMg01no194_a03.g1)
ACCAG383087AG383088
length767787
length of high quality
(start - end)		398 (72 - 469)424 (74 - 497)
definitionCHROMAT_FILE: MSMg01no194_a03.b1 PHD_FILE: MSMg01no194_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:45 2005CHROMAT_FILE: MSMg01no194_a03.g1 PHD_FILE: MSMg01no194_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGTTCCGAGCCCCATTTTTTAATGGTGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTAT
GAGGTCCCATTAGTTGATTCTCGATCTTACAACACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTGCCCTATCTTTGAGGCTTTTCCCCACTT
TCTCCTCTATAAGTGTCGGTGTCTCTAGTTTTACGTGGAGTTCCTTGATC
CACTTAGATTTGACCTTACCACAAGGTGATAGGAATGGATCAATTTGTAA
TCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGCGA
CCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAAATTCTATTCCATTGTA
CTACTTGTCTGTCACATTACCAGTACCATGCAGTCTTTTATTTCAATTGC
TTCTGAATACAGTTGTAGGTCTGGTCATGGTGTATTCACCAGAGGATACT
TTTATCCTTTGACAAGAGTTTTTTGCTATTCTTTGTTTTTTTGTTATTTC
AAGATTATATTTGTTTG

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTCCAGTGAGAGCTATCTCAGTCAC
ACAAAGGGCTGTAGAAATATTTGATCCACAAACAGGGTAATAGTGGCTGA
AGACTAAGCCAAATGAATCCAATATATTGTTTTGTCAGGGGGCTGGAGGA
GCATTCTGGTCCATGTGGGGATCCCATGTGGGGAAGACACTTCTAAAGAT
GTGTCAAGTCAGTGAAGGAGAGCATCAGTAAAATACATGGCTCCTTGGAA
CCCTCTGCCAACAGCACTAGCTTTACCTCAGAGACAGTCCAGGGCCTTGC
TGCGCTGTTCTGCTCCTTGGGGCTGAACCCAGTCTGGTTCGATTATGACG
AATAGCAATGGTTCATAACATTTTAGGAGTTTGTTTCCCCTTTACTGGTA
GGGCTGGGGGTTTCCCTGCTGGAACTTTTAAAGGTTGCTGTCCCTGGTGG
GTTTTGATTGGCAGTCCTTGGCCCATTGTGAAACCCTTTTTGCATTTAGG
GAAAACTGAAGGACATCTTTTCCCTTTCTTTTCCTGCACTTTATTCAGGG
CATTGCCTGGGCAAAATGTCCCTTGGCCTTCCACAGATTCCAACAAAATA
TTTTTTCTCCTTCCACATTTTACCTTTAAGGTGCATGAGCTTAAGGGTGG
CCTACCTAGGCTTTTCTTGATTTTCCTATTAACGAATTACCCTATGTTCT
CCAGTGTCTCGGTCTTGATCTCAGTACCTTCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_a03.g1 MSMg01no194_a03.g1 CHROMAT_FILE:
MSMg01no194_a03.g1 PHD_FILE: MSMg01no194_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:46 2005
         (424 letters)



>mm_chr1_173796728_173797551
          Length = 824

 Score =  812 bits (420), Expect = 0.0
 Identities = 423/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtccagtgagagctatctcagtcacacaaagggctgtagaaatatttgatccacaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagtccagtgagagctatctcagtcacacaaagggctgtagaaatatttgatccacaaac 565

                                                                       
Query: 61  agggtaatagtggctgaagactaagccaaatgaatccaatatattgttttgtcagggggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agggtaatagtggctgaagactaagccaaatgaatccaatatattgttttgtcagggggc 505

                                                                       
Query: 121 tggaggagcattctggtccatgtggggatcccatgtggggaagacacttctaaagatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggaggagcattctggtccatgtggggatcccatgtggggaagacacttctaaagatgtg 445

                                                                       
Query: 181 tcaagtcagtgaaggagagcatcagtaaaatacatggctccttggaaccctctgccaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaagtcagtgaaggagagcatcagtaaaatacatggctccttggaaccctctgccaaca 385

                                                                       
Query: 241 gcactagctttacctcagagacagtccagggccttgctgcgctgttctgctccttggggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcactagctttacctcagagacagtccagggccttgctgcgctgttctgctccttggggc 325

                                                                       
Query: 301 tgaacccagtctggttcgattatgacgaatagcaatggttcataacattttaggagtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 tgaacccagtctggttcgattatgacgaatagcaatggttcataatattttaggagtttg 265

                                                                       
Query: 361 tttcccctttactggtagggctgggggtttccctgctggaacttttaaaggttgctgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcccctttactggtagggctgggggtttccctgctggaacttttaaaggttgctgtcc 205

               
Query: 421 ctgg 424
           ||||
Sbjct: 204 ctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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