Query= MSMg01no194_i06.b1 MSMg01no194_i06.b1 CHROMAT_FILE:
MSMg01no194_i06.b1 PHD_FILE: MSMg01no194_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:24 2005
(634 letters)
>mm_chr1_188836199_188837232
Length = 1034
Score = 934 bits (483), Expect = 0.0
Identities = 581/633 (91%), Gaps = 35/633 (5%)
Strand = Plus / Plus
Query: 5 gaattcaataaagaccctgcttttttgctggatgtagcttctaaacagaaatcc-aattg 63
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct: 205 gaattcaataaagaccctgcttttctgctggatgtagcttctaaacagaaatcctaat-g 263
Query: 64 tgctgtctgtctttgacacagtcggaaaccccatggagtgctattgtggtacggagggag 123
||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||||||||
Sbjct: 264 tgctgtctgtctttgacacagtcagaaaccccatagagtgctgttgtggtatggagggag 323
Query: 124 gagcgtctctgaggcaagctccctggctaggagctcaggggctttcccagtgatgatgaa 183
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gagcgtctctgaggcaagctc---------------aggggctttcccagtgatgatgaa 368
Query: 184 gcaggcctctgtgggagttagcagtctgccttctccaccagggagttgctgccgccatca 243
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 369 gcaggcctctgtgggagttagaagtctgccttctccaccagggagttgctgctgccatca 428
Query: 244 tagcagatgattgcaggacaccacaaatacttcctttcccgagtcattatttgcatggct 303
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 429 tagcagatgattgtaggacaccacaaatacttccttccccgagtcattatttgcacggct 488
Query: 304 cagcattgacctatatcactgaagccacctatcccttctagacttctaaattgccattca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 489 cagcattgacctatatcactgaagccacctatcccttctagacttctaaattgtcattca 548
Query: 364 ctcaaagatccactttgtctacacaaatagagaataatcatttcactaatattattccct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctcaaagatccactttgtctacacaaatagagaataatcatttcactaatattattccct 608
Query: 424 agtgttctttaaagaattattccatatttatttacatcccttctctctctcccagtttgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agtgttctttaaagaattattccatatttatttacatcccttctctctctcccagtttgt 668
Query: 484 gtgtctctctctgtgtgtgtgtatgtgtgtgt--gtgagtataagcacacatgcatacat 541
|||||| |||||||||| |||||||| |||||| | |||||||||||||||||
Sbjct: 669 gtgtct------gtgtgtgtgtgcgtgtgtgtttgtgagtgtgagcacacatgcatacat 722
Query: 542 tcacgcacatgtgtgcacatgtgtcatagtgtagtatgtggaggtcagaggataacatct 601
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tca----------tgcacatgtgtcatagtgtagtatgtggaggtcagaggataacatct 772
Query: 602 aaagtccgctttctccttctactctattggtcc 634
|||||||| |||||||||||||| |||||||||
Sbjct: 773 aaagtccgttttctccttctactgtattggtcc 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_i06.g1 MSMg01no194_i06.g1 CHROMAT_FILE:
MSMg01no194_i06.g1 PHD_FILE: MSMg01no194_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:24 2005
(664 letters)
>mm_chr1_188865322_188866385
Length = 1064
Score = 1268 bits (656), Expect = 0.0
Identities = 662/664 (99%)
Strand = Plus / Minus
Query: 1 acagatggaagaggtggagtcattcaatgaaatatagaacacaacagaaaatagtcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acagatggaagaggtggagtcattcaatgaaatatagaacacaacagaaaatagtcacca 623
Query: 61 cttaaaccaggttcaccaatacatgataacctcgtgaatgtggagtcaaagccactagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 622 cttaaaccaggttcaccaatacatgataacctcgtgaatgtggagtcaaagtcactagat 563
Query: 121 acaaaatatacagataattatttcaacaatttcgagctaaaattacatagcttctctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acaaaatatacagataattatttcaacaatttcgagctaaaattacatagcttctctctg 503
Query: 181 gctgcttgagttacccttgcagtcactgtcacggagcactgggtcttcctagtctgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctgcttgagttacccttgcagtcactgtcacggagcactgggtcttcctagtctgtgtg 443
Query: 241 tattactctgtccttctcggttgtccatgtatcattcatgaattacatactttcctgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tattactctgtccttctcggttgtccatgtatcattcatgaattacatactttcctgaaa 383
Query: 301 ggaagcaagattgcaagaggtaaagcaaatatgacacacctagtgcacatgctctctaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaagcaagattgcaagaggtaaagcaaatatgacacacctagtgcacatgctctctaaa 323
Query: 361 ggtggtggtctgcaccatcctcctctagttatgtgcgcaaaaagggcccaaataatactg 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 ggtggtggtctgcaccatcctcctctggttatgtgcgcaaaaagggcccaaataatactg 263
Query: 421 tctgctttctaagagacactaataacacatggaattccctatcagacactgacaaagata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctgctttctaagagacactaataacacatggaattccctatcagacactgacaaagata 203
Query: 481 gctgtcacatgtaattttaaaaataatccacactttctccggctagttgctggcagtctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gctgtcacatgtaattttaaaaataatccacactttctccggctagttgctggcagtctc 143
Query: 541 caagcagccgtctggccctgggtcccgtggccagtctgcagaatgctaacaaccactgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 caagcagccgtctggccctgggtcccgtggccagtctgcagaatgctaacaaccactgtg 83
Query: 601 gtcccactcagctccctctagccccatgaaaggagaacactagagacttacatttatacc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 gtcccactcagctccctctagccccatgaaaggagaacactagagacttacatttatacc 23
Query: 661 agcc 664
||||
Sbjct: 22 agcc 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
