Query= MSMg01no195_a16.b1 MSMg01no195_a16.b1 CHROMAT_FILE:
MSMg01no195_a16.b1 PHD_FILE: MSMg01no195_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:07 2005
(640 letters)
>mm_chr1_180405978_180407013
Length = 1036
Score = 1133 bits (586), Expect = 0.0
Identities = 624/640 (97%), Gaps = 8/640 (1%)
Strand = Plus / Minus
Query: 5 gaattcacatctaccttaggctatattgtttcaaccttaccacctaaaaagggcttttaa 64
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 915 gaattcacatccaatttaggctatattgtttcaaccttaccacctaaaaagggtttttaa 856
Query: 65 aagaaatttttgccaggcagtggtggtccatgcctttaatcccagcacttgggaggcaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aagaaatttttgccaggcagtggtggtccatgcctttaatcccagcacttgggaggcaga 796
Query: 125 ggcaagcagatttctgagttcgaggccagcctggtctacagagtgagttctaggatagcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 795 ggcaagcagatttctgagttcgaggccagcctggtctacagagtgagttctaggacagcc 736
Query: 185 agggctacacagagaaaccctgtctcgaaaaacc----aaaaaaaaaattatacacttta 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 735 agggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaattatacacttta 676
Query: 241 actcaaatcttctatttaaaaaggcattggtttatgattgacagttcatgttctttaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 actcaaatcttctatttaaaaaggcattggtttatgattgacagttcatgttctttaagc 616
Query: 301 tgcttatcttttattcaggaaatattttaagtaaataaagtaagcacaatttatgcaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgcttatcttttattcaggaaatattttaagtaaataaagtaagcacaatttatgcaagt 556
Query: 361 aatcattacacttctattatacaaaatcaaatactaaaccaaaataatagaaataataat 420
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 555 aatcattatacttctattattcaaaatcaaatactaaaccaaaataatagaaataata-- 498
Query: 421 aataatactatgtaaccaaacaattgtttttgaagtaccatttcctataaattttgcata 480
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aata--actatgtaaccaaacaattgtttttgaagtaccatttcctataaattttgcata 440
Query: 481 attattaaaaacttattgaggctgaagagatggctcagcaattaaggcgccatgctcttg 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attgttaaaaacttattgaggctgaagagatggctcagcaattaaggcgccatgctcttg 380
Query: 541 cagtgaacctgagttcagttaccatgtaactccagctacagggggccagatgcacagaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtgaacctgagttcagttaccatgtaactccagctacagggggccagatgcacagaca 320
Query: 601 cacacacacatgcacatgcacagagagagacacacacatg 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacacacacatgcacatgcacagagagagacacacacatg 280
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1036
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1026
Effective search space: 646380
Effective search space used: 646380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_a16.g1 MSMg01no195_a16.g1 CHROMAT_FILE:
MSMg01no195_a16.g1 PHD_FILE: MSMg01no195_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:07 2005
(634 letters)
>mm_chr1_180288265_180289298
Length = 1034
Score = 1210 bits (626), Expect = 0.0
Identities = 632/634 (99%)
Strand = Plus / Plus
Query: 1 ctggtgaacggggagagcctgaagacagtagcgctgaaagcagaaactgcaacaacaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtgaacggggagagcctgaagacagtagcgctgaaagcagaaactgcaacaacaagc 260
Query: 61 aagcagagaggcctgtgggtaaggaagcaagaagtgagcgggaaaaccgagctgtgaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcagagaggcctgtgggtaaggaagcaagaagtgagcgggaaaaccgagctgtgaaga 320
Query: 121 ccacattagcaatgaccttgaataactcttgtgaaccctctccaagaatatgttcaaatt 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ccacattagcaatgaccttgaataactcttgtgaaccttctccaagaatatgttcaaatt 380
Query: 181 actcccatgggccttggctggcttgaaactggctggtctcaaagccaaagacatccgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcccatgggccttggctggcttgaaactggctggtctcaaagccaaagacatccgtct 440
Query: 241 gcctcagcttcctgagtgggaaggataaaggtgtgtccctatgagcttcttggaatgttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctcagcttcctgagtgggaaggataaaggtgtgtccctatgagcttcttggaatgttg 500
Query: 301 ttaagaagaagaagcaccaatcagcctggaagggtagtacatacccataaccccagcatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaagaagaagaagcaccaatcagcctggaagggtagtacatacccataaccccagcatc 560
Query: 361 ccctgcatcggggtggtagaggtcgaaagatcaggagttcaaggtcattcttagctactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ccctgcatcggggtggtagaggtcgaaagatcaggagttcaaggtcattctcagctactt 620
Query: 421 agtataaggttacctggggctccatcaaaccctgtcaaaaggaagagagggtaaaaaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtataaggttacctggggctccatcaaaccctgtcaaaaggaagagagggtaaaaaagg 680
Query: 481 aagaaagaagataactactctcatagaagcttgggaatgctaacaccagtcaaccctctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaaagaagataactactctcatagaagcttgggaatgctaacaccagtcaaccctctt 740
Query: 541 agcaatgaacttgagcctctgggcagcctcaaagagttctccaagaaaagaagagatgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcaatgaacttgagcctctgggcagcctcaaagagttctccaagaaaagaagagatgaa 800
Query: 601 aacaactcctgaatttcccaagtaatttcccagc 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 aacaactcctgaatttcccaagtaatttcccagc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
