TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTCTTCTTATTTCTCCAAAGGTGTTGTCTCTCAGGATTTCCAC
AATAAACTTTATAAGTAGCAAACTCACAATAAAATCTGCTTCCTAGGGAC
TCTGCTTGTTATCTCTACATACCACAGACTGCCCTTCTTCATGTGTTCTG
CTCTAATTTCAAACTGATGTTTGTTGGGTATTGTTATCAAGATGTTACGC
AGGCACTTCAGACTTGACAGGACCCTGATATTGCACCTTTTCCCCCCTTT
TAATAAATGATTCCATCATTCACTGGGAGTCTCAAACCAGAGGTATGGGA
GTCCACCTTGGTCCCTTCCTAATTATTCATGAATGATCTGTTGTTCATTC
TTGTTGAGTTTGCATTTGTTCATCCTGATAGTATGCATGTCCCTGATGTG
ACTACTCCATCGTATCTCAGATTCCCATCATCACTCATTTCACTCTCCTT
CTTTACTGCCATATATCTCTGAGTAATTCTATAAAGTTTAAGTATTATCA
CACTATTTCCTGCTCTGGTCTGCCAGGGATGCCTATTGCCTTCTCAAGTC
CAAACTTCTCAGCAAGGCATGGAGATTGAAGCTTTGCAATGGGTCCTCTT
ATCAATTCTTTTTCTGTTGCTATGATAAAAACACCATGGTCAAGGCAGCT
TATAGAAGGACAATTTTATTGG

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTTGTCGACAAGCCTTCAGGGTACTTTTTTGATTGGTGATTAA
TATAAGAGGGCCCAGCTCATTGTAGGAGGGGCCAGTCCTTGGCAGGTGGT
CCTGGGTTGTATAAGAAAGCAAGCTGGGCAAGCAATGGGGAACAAGACAG
TAAGCAGTAAGCAACCTCAGTGGTCTCTGCTTCAGTTCCTGCCTCCTAGT
TCTTAGCTGAGTTCCTGCCTTGATTTCCCTCCCTGACAGAGTATGCACCT
GAGAGTGCCCCTTCTTCCTCATGTTGCATTTGGTCATGATCATTATCACA
GAAAACAAAACCAAACTTAAGTAGCACAACTAGACTGTTTTAAATTATTA
AAATCAAACATTTTAAAGTACATACATTTTGCAACAATTAAAATAGTTTT
TAAAAAAATAAAAAACACCTACTCTGTGGTGCATATAGCTCATTTTCTTT
CTTTCAATTTATTTATTACGTAAACAGTATTCTGCCTGCATGCTAAGAGA
TCCCAGTATAGATAGTTATGAGCCACCATGTGGCTGCTAGGAATTGAACT
CAGGACCTCTAGAAGAACAGCCAGTGCTCTTAACCTCTGAGCCATCTCTC
CAGTCCCTTTTTCATTTTTTACGGCAAAATCTCATGTAACCCAGTTAAGT
CACAAGCACATTGTAAAGTCAAAA

Query= MSMg01no195_e10.b1 MSMg01no195_e10.b1 CHROMAT_FILE:
MSMg01no195_e10.b1 PHD_FILE: MSMg01no195_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:27 2005
         (644 letters)



>mm_chr1_4667841_4668884
          Length = 1044

 Score = 1203 bits (622), Expect = 0.0
 Identities = 637/642 (99%), Gaps = 2/642 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattt-cttcttatttctccaaaggtgttgtctctcaggatttccacaataaac 62
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ggaattcatttcctt-ttatttctccaaaggtgttgtctctcaggatttccacaataaac 786

                                                                       
Query: 63  tttataagtagcaaactcacaataaaatctgcttcctagggactctgcttgttatctcta 122
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tttatgagtagcaaactcacaataaaatctgcttcctagggactctgcttgttatctcta 726

                                                                       
Query: 123 cataccacagactgcccttcttcatgtgttctgctctaatttcaaactgatgtttgttgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cataccacagactgcccttcttcatgtgttctgctctaatttcaaactgatgtttgttgg 666

                                                                       
Query: 183 gtattgttatcaagatgttacgcaggcacttcagacttgacaggaccctgatattgcacc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gtattgttatcaagatgttacgcaggcacttcagacttgacaggaccctgatattgcacc 606

                                                                       
Query: 243 ttttccccccttttaataaatgattccatcattcactgggagtctcaaaccagaggtatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttttccccccttttaataaatgattccatcattcactgggagtctcaaaccagaggtatg 546

                                                                       
Query: 303 ggagtccaccttggtcccttcctaattattcatgaatgatctgttgttcattcttgttga 362
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggagtccaccttggtcccttcctcattattcatgaatgatctgttgttcattcttgttga 486

                                                                       
Query: 363 gtttgcatttgttcatcctgatagtatgcatgtccctgatgtgactactccatcgtatct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtttgcatttgttcatcctgatagtatgcatgtccctgatgtgactactccatcgtatct 426

                                                                       
Query: 423 cagattcccatcatcactcatttcactctccttctttactgccatatatctctgagtaat 482
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cagattcccatcatcacgcatttcactctccttctttactgccatatatctctgagtaat 366

                                                                       
Query: 483 tctataaagtttaagtattatcacactatttcctgctctggtctgccagggatgcctatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctataaagtttaagtattatcacactatttcctgctctggtctgccagggatgcctatt 306

                                                                       
Query: 543 gccttctcaagtccaaacttctcagcaaggcatggagattgaagctttgcaatgggtcct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gccttctcaagtccaaacttctcagcaaggcatggagattgaagctttgcaatgggtcct 246

                                                     
Query: 603 cttatcaattctttttctgttgctatgataaaaacaccatgg 644
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cttatcaattctttttctgttgctatgataaaaacaccatgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)