BAC Information

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BAC

Clone NameMSMg01-195H05
Chromosome1 (Build37)
Map Location 112,039,039 - 112,174,030
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195H05.T7 (MSMg01no195_h05.b1)MSMg01-195H05.TJ (MSMg01no195_h05.g1)
ACCAG383967AG383968
length730730
length of high quality
(start - end)		687 (44 - 730)564 (74 - 637)
definitionCHROMAT_FILE: MSMg01no195_h05.b1 PHD_FILE: MSMg01no195_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:40 2005CHROMAT_FILE: MSMg01no195_h05.g1 PHD_FILE: MSMg01no195_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,173,351 - 112,174,030)(112,039,039 - 112,039,602)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGCGG
AATTCACTCTTTTTTCTGGTAGAGTATGTTCAGACTCTCAATATCCCATC
AATTCTTTGACCTGGTATTTATATTATGTATCTGTTCTGGACATTAATAA
CTTTTCTTTCGGACATTAATATAAACAACTATAGTCATCCTTATTTTAAT
GTCATATAATACCAAACTCCATCCAATAGCTTAGTTAGTTTTTGATGCTG
CATTTATCATTTACAACTATATTTTTTTTCTTGCTGGTGAACATGTCTTA
TTAAAAAGCAAATACTGTATAACAGAAAGAAAATAGGTCATGAGGCTATT
TGTATGGGTTTAAGTTAGAATTGTTTAGATATACTTAATATTAGAAAGAT
TTGTTAAGAGTCAGCCTAAAATTTCTTATTCTTTATTTGTTTTCTCTTAT
CCTTGTTGACAATCCTCACATTAAGATGTATTCAAAAGTTATAAGATTTT
TCATTAGTTACAACACTATGTCTTGTAGAAATTTCTCAAACTTTTGGGCA
CCTCAAAATTAATTTTTAGAGTGTTTTTAGTGGCTTGTGATCCAGGTAAC
CTTAACTTGAATGTGAATCTCTCTCTCTACATCTGCTTGTCTTTGCAGAT
TCAGGGGGTACCTTGTTATACTATGTTATTGATATATCTGAGAAAAAAAT
GTTGATTTTCTGTATATTCTGTTGTAGCTN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTATTTGTGTTAGTCTACATGTACA
GTGATCTAAACAAACAGTCTAAATTGTTCACAATAAATAACATGCATATA
TCCAAAGGTATATAACATGTTGATGTGGGAATTAATACAATCTTGTGTGG
TAAGTAAATATAATTGACCAAAATTGATACTCAAATCCCAGTGCCTTGTA
TATAATAAAGATTAAGAAAGAATTTATATCCTATATATTTTAAGTTTAGC
TGGATTATTTTGCAGAGAACATAAGCAATATTTAAGTCTTGTGATTAGGA
AACAGGAAGAAAATTCCCAGTATAAAACTCTAGTAGAAATAAATGTGTGT
GATAGTCCTATAAATTTAAATTGCAATGCTGATTTCTATTGACTTGGTTT
ACCTGAAATGTATACATGTGTAATAGTGGAAGCATTGAGAGGTTTGTCTG
AAGCAACTGCAAACAAAGTAGTAGACAGGCAGTTAGCTAAGGAAGTACAT
TATTTATCTTGTCAAAAGTAATTATATATTTTAAAAGTACAATTTATATT
GCGAGAAAGAGCTTGGCTGCTAAAAGAGGAACACTTAGATGAATAATGTA
TAATTGTCATGTCTTGCTGTATAGACGTGATCTCATTTTTAACATAGGAT
CTGGAAAATGAATTAATTTTTGTGAAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_h05.b1 MSMg01no195_h05.b1 CHROMAT_FILE:
MSMg01no195_h05.b1 PHD_FILE: MSMg01no195_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:40 2005
         (687 letters)



>mm_chr1_112173145_112174231
          Length = 1087

 Score = 1292 bits (668), Expect = 0.0
 Identities = 677/680 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcactcttttttctggtagagtatgttcagactctcaatatcccatcaattctttg 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattcactcttttttatggtagagtatgttcagactctcaatatcccatcaattctttg 827

                                                                       
Query: 67  acctggtatttatattatgtatctgttctggacattaataacttttctttcggacattaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 acctggtatttatattatgtatctgttctggacattaataacttttctttcggacattaa 767

                                                                       
Query: 127 tataaacaactatagtcatccttattttaatgtcatataataccaaactccatccaatag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tataaacaactatagtcatccttattttaatgtcatataataccaaactccatccaatag 707

                                                                       
Query: 187 cttagttagtttttgatgctgcatttatcatttacaactatattttttttcttgctggtg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cttagttagtttttgatgctgcatttatcatttacaactatattttttttcttgctggtg 647

                                                                       
Query: 247 aacatgtcttattaaaaagcaaatactgtataacagaaagaaaataggtcatgaggctat 306
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aacatgtcttattaaaaagcagatactgtataacagaaagaaaataggtcatgaggctat 587

                                                                       
Query: 307 ttgtatgggtttaagttagaattgtttagatatacttaatattagaaagatttgttaaga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttgtatgggtttaagttagaattgtttagatatacttaatattagaaagatttgttaaga 527

                                                                       
Query: 367 gtcagcctaaaatttcttattctttatttgttttctcttatccttgttgacaatcctcac 426
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 526 gtcagcctaaaatttcttattctttatttgttttctcttatccttgttgaaaatcctcac 467

                                                                       
Query: 427 attaagatgtattcaaaagttataagatttttcattagttacaacactatgtcttgtaga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attaagatgtattcaaaagttataagatttttcattagttacaacactatgtcttgtaga 407

                                                                       
Query: 487 aatttctcaaacttttgggcacctcaaaattaatttttagagtgtttttagtggcttgtg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatttctcaaacttttgggcacctcaaaattaatttttagagtgtttttagtggcttgtg 347

                                                                       
Query: 547 atccaggtaaccttaacttgaatgtgaatctctctctctacatctgcttgtctttgcaga 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atccaggtaaccttaacttgaatgtgaatctctctctctacatctgcttgtctttgcaga 287

                                                                       
Query: 607 ttcagggggtaccttgttatactatgttattgatatatctgagaaaaaaatgttgatttt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttcagggggtaccttgttatactatgttattgatatatctgagaaaaaaatgttgatttt 227

                               
Query: 667 ctgtatattctgttgtagct 686
           ||||||||||||||||||||
Sbjct: 226 ctgtatattctgttgtagct 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no195_h05.g1 MSMg01no195_h05.g1 CHROMAT_FILE:
MSMg01no195_h05.g1 PHD_FILE: MSMg01no195_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:40 2005
         (564 letters)



>mm_chr1_112038839_112039802
          Length = 964

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctatttgtgttagtctacatgtacagtgatctaaacaaacagtctaaattgttcacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 atctatttgtgttagtctacatgtacagtgatctaaacaaacagtctaaaatgttcacaa 260

                                                                       
Query: 61  taaataacatgcatatatccaaaggtatataacatgttgatgtgggaattaatacaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataacatgcatatatccaaaggtatataacatgttgatgtgggaattaatacaatct 320

                                                                       
Query: 121 tgtgtggtaagtaaatataattgaccaaaattgatactcaaatcccagtgccttgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtggtaagtaaatataattgaccaaaattgatactcaaatcccagtgccttgtatat 380

                                                                       
Query: 181 aataaagattaagaaagaatttatatcctatatattttaagtttagctggattattttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaagattaagaaagaatttatatcctatatattttaagtttagctggattattttgc 440

                                                                       
Query: 241 agagaacataagcaatatttaagtcttgtgattaggaaacaggaagaaaattcccagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 agagaacataagcaatatttaagtcttgtgattaggaaacaggaagaaaatccccagtat 500

                                                                       
Query: 301 aaaactctagtagaaataaatgtgtgtgatagtcctataaatttaaattgcaatgctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaactctagtagaaataaatgtgtgtgatagtcctataaatttaaattgcaatgctgat 560

                                                                       
Query: 361 ttctattgacttggtttacctgaaatgtatacatgtgtaatagtggaagcattgagaggt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ttctattgacttggtttacctgaaatgtatacatgtgtaatagtggaagcattgggaggt 620

                                                                       
Query: 421 ttgtctgaagcaactgcaaacaaagtagtagacaggcagttagctaaggaagtacattat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtctgaagcaactgcaaacaaagtagtagacaggcagttagctaaggaagtacattat 680

                                                                       
Query: 481 ttatcttgtcaaaagtaattatatattttaaaagtacaatttatattgcgagaaagagct 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 ttatcttgtcaaaagtaattatatattttaaaagtacaatttatattgggagaaagagct 740

                                   
Query: 541 tggctgctaaaagaggaacactta 564
           ||||||||||||||||||||||||
Sbjct: 741 tggctgctaaaagaggaacactta 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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