BAC Information

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BAC

Clone NameMSMg01-195L01
Chromosome1 (Build37)
Map Location 131,999,411 - 132,000,045
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195L01.T7 (MSMg01no195_l01.b1)MSMg01-195L01.TJ (MSMg01no195_l01.g1)
ACCAG384109AG384110
length708716
length of high quality
(start - end)
633 (72 - 704)637 (80 - 716)
definitionCHROMAT_FILE: MSMg01no195_l01.b1 PHD_FILE: MSMg01no195_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:59 2005CHROMAT_FILE: MSMg01no195_l01.g1 PHD_FILE: MSMg01no195_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGCTACTCCCAGAGGAATGACTGTCCTTTGTTCTTGTCTGTG
AAGGCATAGTATCTGACTTCACTTGATTTCCCTCTATGCTTCTTCAGGCA
GCACACTCAATTCAGAGAAGTCAAATATGTCTTCCTCTTTGGGCTTGTAA
TTTGGCTAATGGGCCCCAGTATTATTTCTCAGGTTCCTTTCAGCAAGCAT
TACTAAAGGGTTTTCTGTGACTTCATGGCATTTTTTTTCTTTCCTCTCCT
TGACAGGTTCATGAGGCAGTCCCATGTTACAGTGAGTGTGATCAATATTC
CTGGGTCGTAGAACACTGGTCTCCATGCAAGATCAACAATGAGCTGAGAT
CCCCACGCTGTGGAAGAGGAACACAGTCTAGAAGAATCAGGTGTGTGACC
CTGAAGGGGTGGAGCATTTGTGTTCTTTATAAAACTACCAGCTTTGTTTC
CAGGTACATGATGATATCTATGTTCTCTGTGTTCACCTCCAAAAAGCCAG
ACAAGCAAATGTAGCCCTCCTTCCATGTGAACAGTGGAATGGTCGCTGCA
ATCTACCACCCACATCTTTACTATTTCCTAATTAGACCAGAGCCAGTCCA
CTTCAAGGGACAGACCACTGTCCTCCACTGACTCCCAGCCAACCAGTGCT
AACAAATC
NATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGAGGAATACCGAATG
GCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGTCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGT
AAGAAGGACACATGCTCCACTATGTTCATAGAAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGA
TAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAAT
TTGCTAAACACATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_l01.b1 MSMg01no195_l01.b1 CHROMAT_FILE:
MSMg01no195_l01.b1 PHD_FILE: MSMg01no195_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:59 2005
         (633 letters)



>mm_chr1_131999211_132000245
          Length = 1035

 Score = 1147 bits (593), Expect = 0.0
 Identities = 624/635 (98%), Gaps = 2/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaatgactgtcctttgttcttgtctgtgaaggcatagtatctgacttcacttgatttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaatgactgtcctttgttcttgtctgtgaaggcatagtatctgacttcacttgatttcc 260

                                                                       
Query: 61  ctctatgcttcttcaggcagcacactcaattcagagaagtcaaatatgtcttcctctttg 120
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctatgcttcttcaggtagcgcactcaattcagagaagtcaaatatgtcttcctctttg 320

                                                                       
Query: 121 ggcttgtaatttggctaatgggccccagtattatttctcaggttcctttcagcaagcatt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttgtaatttggctaatgggccacagtattatttctcaggttcctttcagcaagcatt 380

                                                                       
Query: 181 actaaagggttttctgtgacttcatggca--ttttttttctttcctctccttgacaggtt 238
           |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||
Sbjct: 381 actaaagggttttctgtgacttcatggcattttttttttctttcctctcctttacaggtt 440

                                                                       
Query: 239 catgaggcagtcccatgttacagtgagtgtgatcaatattcctgggtcgtagaacactgg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgaggcagtcccatgttacagtgagtgtgatcaatattcctgggtcgtagaacactgg 500

                                                                       
Query: 299 tctccatgcaagatcaacaatgagctgagatccccacgctgtggaagaggaacacagtct 358
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctccatgcaagatcaataatgagctgagatccccacgctgtggaagaggaacacagtct 560

                                                                       
Query: 359 agaagaatcaggtgtgtgaccctgaaggggtggagcatttgtgttctttataaaactacc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagaatcaggtgtgtgaccctgaaggggtggagcatttgtgttctttataaaactacc 620

                                                                       
Query: 419 agctttgtttccaggtacatgatgatatctatgttctctgtgttcacctccaaaaagcca 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 agctttgtttccaggtacatgatgatatctatgttctctgtgttcacctccaaaaatcca 680

                                                                       
Query: 479 gacaagcaaatgtagccctccttccatgtgaacagtggaatggtcgctgcaatctaccac 538
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaagcaaatgtagccctcctaccatgtgaacagtggaatggtcgctgcaatctaccac 740

                                                                       
Query: 539 ccacatctttactatttcctaattagaccagagccagtccacttcaagggacagaccact 598
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 741 ccacatctttactatttcctaattataccagagccagtccacttcatgggacagaccact 800

                                              
Query: 599 gtcctccactgactcccagccaaccagtgctaaca 633
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 gtcctccactgactcccagccaaccagtgctaaca 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1035
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1025
Effective search space:   638575
Effective search space used:   638575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)