BAC Information

Click to search

BAC

Clone NameMSMg01-196B01
Chromosome1 (Build37)
Map Location 168,319,325 - 168,319,617
singlet/doubletsinglet
Overlap geneTada1l
Upstream geneIqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
Downstream genePogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196B01.T7 (MSMg01no196_b01.b1)MSMg01-196B01.TJ (MSMg01no196_b01.g1)
ACCAG384331AG384332
length791736
length of high quality
(start - end)
61 (301 - 361)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no196_b01.b1 PHD_FILE: MSMg01no196_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:29 2005CHROMAT_FILE: MSMg01no196_b01.g1 PHD_FILE: MSMg01no196_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCATACCTCCCTCTCCNACCACAGATCACCTAGCAAAAAGAACATC
AXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGGAGNNGAGGGGNGGAANN
NNANTTGCCCAAAAAAGAGAGGNNGAGAAANANNNGAAAAAAGGNNNAAN
ANNNNNAATTTTTAGCCCAAAGAAGAGGAAAANAANNNGGAGAANCNANC
NCAAANNAGNCAGAAGGGNNAAGAANAAAAANNCAGGGGAAAGAAGAAGG
NGGNGAGGANGNGGAGAAAGAGGAAAANNCNNCCANGGNAGGAGTTTTTG
CAAGCTCGAATAACCACTCTGGAAATCCGTCTGGTGGTTCCTCAGAAAAT
TGGACATAGTTTTTTTTTATGACCANGCAANACCCCNCCGGGGCAAANAT
TTTTTTTATGCCCCACCCGGCAAGAAGGACATATGTTCCACTATGTTCAT
AGTAGCCTTATTTATAATAAAGAGAAGCTGGAAAGAATCCAGATGTCGCT
CAACAGAGGAATGGATATAAAAAATGTGGTACATTTACACAATGGAGTAC
TATTCAGTTGTTAAAAAAAAATGAATTTACGAAATTTCTGGGAAAATGGT
TGGAACTGGAGGGTAAAATCTTGAATGAGGTGATCTAATCTTAAAAGAAT
TCATATGAAATGGTACTTATTGAAAAGTGGGAAATTTGGGTAAATACGTT
ATTATTTTTATTATATAAGGTACAAAGATGTTAAAATACATTGAATATGG
AATAAACGATAAAATATTAGTGTGGAAAAATTTATTCTCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTGAAAACCCGTATTAAGTTG
CACAAGGGCATGCTGATAAGACAGTTAGATTGGTCTGAGTAAGTGCCCAG
CCTGACTCTGTCGCTCTGTGCTGACATATGACAGGAGGGCTCTGCTTTCA
CACTCCCCAGCCAGCTCTGATGAACTTGGCTCTTCTGTAGGTGAAGAGGA
TTTGAGCAGACATGCGTGGTGTTCTCTGCCTGTTTGAAGAGCTTTTGAGA
GCAAAAGCTCTTGCAGTGAACGTTGTAAACAGCCAATACTAGTGTGTCAA
ATTTCAAAGTAATTTGTCTTTAACACAAAGTATTTTCTTTCCCAAAACTC
ATTTCTGAGAAGCATCAGCTAAGGAAAACAAGACAAAATGCATGTGGCAT
GGTGGCCATCTGCCCTGTGTGATGTCAAATCTCAGCCCTGCAAACCAAAA
TAAAATCCACTTCCAAGCGAAGCTCCCCATGGAGCACGGCCCCCTGAGAG
CAGAGTGAAGGCAGCTCACCCCGCACCCGTGCCCTGCATCTGTGGGCGTG
CGCTCTGTTCAGTAGGACTTCTGTCCGGTTGCATCTCCCCCTAAATGGTA
TTAGCCCTTGACGCTGGAACTTCCATGCTTTGCTCTCGACGCCTTCTTGT
TATTTTTTTTTGTTTCCCACACAACTTATTCTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_b01.g1 MSMg01no196_b01.g1 CHROMAT_FILE:
MSMg01no196_b01.g1 PHD_FILE: MSMg01no196_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:29 2005
         (295 letters)



>mm_chr1_168319123_168319817
          Length = 695

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtgaaaacccgtattaagttgcacaagggcatgctgataagacagttagattggtctga 62
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 tgtgaaaacccgtattaagttgcacaagggcatgctgataagacacttagattggtctga 262

                                                                       
Query: 63  gtaagtgcccagcctgactctgtcgctctgtgctgacatatgacaggagggctctgcttt 122
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 gtaagtgcccagcctgactctgtcgctctgtgccgacatatgacaggagggctctgcttt 322

                                                                       
Query: 123 cacactccccagccagctctgatgaacttggctcttctgtaggtgaagaggatttgagca 182
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 323 cacactccccagccagctctgatgaactcggctcttctgtaggcgaagaggatttgagca 382

                                                                       
Query: 183 gacatgcgtggtgttctctgcctgtttgaagagcttttgagagcaaaagctcttgcagtg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gacatgcgtggtgttctctgcctgtttgaagagcttttgagagcaaaagctcttgcagtg 442

                                                                
Query: 243 aacgttgtaaacagccaatactagtgtgtcaaatttcaaagtaatttgtcttt 295
           ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aacattgtaaccagccaatactagtgtgtcaaatttcaaagtaatttgtcttt 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)