BAC Information

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BAC

Clone NameMSMg01-196D10
Chromosome1 (Build37)
Map Location 41,081,256 - 41,081,534
singlet/doubletsinglet
Overlap genenone
Upstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196D10.T7 (MSMg01no196_d10.b1)MSMg01-196D10.TJ (MSMg01no196_d10.g1)
ACCAG384414
length753827
length of high quality
(start - end)
---279 (135 - 413)
definitionCHROMAT_FILE: MSMg01no196_d10.b1 PHD_FILE: MSMg01no196_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:41 2005CHROMAT_FILE: MSMg01no196_d10.g1 PHD_FILE: MSMg01no196_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXX
TTTTTTTCTTTTTTNTCTCTCCTCCCCTNTTTTTTNTTTNCTNAATTAAC
TCCCCCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACCTTGTGGCTTT
TTGTTAGGAGGTATGAAGAAGAAAGGCCTTTTCCCAGTGAGGAATACACT
AATGTGATTGATTCTGGTTCAATAGTCCTCTCAATCTTTCCCTTTTCCTT
TCCCTTTTAGGACCATAAGAAGATGAGCGAAACCACCGGCATTATGGGAA
ATACCACAAAAAGTATGGTTGAGCACATCAGAATTTTACCTCTCAGTCTT
ATGCAGCAGCAATAGCATCTGTTAGTTCCCCTCCCCTAGCACTGCCTCAG
TCTGCGCTCCCTGTTCTGTTAACGACCGACCCCTCAAATTATCTGTCTCT
AATTTGGGGGGGAGTGGCTCGCCCCACAAAAAAATTTATCTTACTGCCCT
ATGTTCTGTCCCTTTTTATTCCTTAAATTTTTATACTTTTTTCTTGCTCG
TTTTTTTTTTATTTTTTTTTTATATATCCCTAAAATCATCCCTCTTATTT
CCCCATTATTTTATTATACTCATCTCTTCATCTTCTTCTTTTTTAGTCCC
TCCCCCGCCCCCTTTTTTCTTCTTTACATCCCCACCTTTTTATATTTATC
TCCACACTTCTATTTATACTTTATCTTTTTTTTTATTTCGTACTTTTCTT
TTAATTCCTATTCTCTTCCCACTACTTCTCCCCCCACTCACTATTCCTCC
ATTTTCTTTCATACTCCTTTCTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_d10.g1 MSMg01no196_d10.g1 CHROMAT_FILE:
MSMg01no196_d10.g1 PHD_FILE: MSMg01no196_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:41 2005
         (279 letters)



>mm_chr1_41081056_41081734
          Length = 679

 Score =  493 bits (255), Expect = e-144
 Identities = 273/279 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaccttgtggctttttgttaggaggtatgaagaagaaaggccttttcccagtgaggaa 60
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttcaccttgtggctttttgttagtaggtatgaagaagaaaggcgttttcccagtgaggaa 260

                                                                       
Query: 61  tacactaatgtgattgattctggttcaatagtcctctcaatctttcccttttcctttccc 120
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 261 tacactaatgtgattgattctggttcaatagtcctctcaatccatcccttttcctttccc 320

                                                                       
Query: 121 ttttaggaccataagaagatgagcgaaaccaccggcattatgggaaataccacaaaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaggaccataagaagatgagcgaaaccaccggcattatgggaaataccacaaaaagt 380

                                                                       
Query: 181 atggttgagcacatcagaattttacctctcagtcttatgcagcagcaatagcatctgtta 240
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 atggctgagcacatcagaattttacctctcagtcttgtgcagcagcaatagcatctgtta 440

                                                  
Query: 241 gttcccctcccctagcactgcctcagtctgcgctccctg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcccctcccctagcactgcctcagtctgcgctccctg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)