Query= MSMg01no196_d20.b1 MSMg01no196_d20.b1 CHROMAT_FILE:
MSMg01no196_d20.b1 PHD_FILE: MSMg01no196_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:43 2005
(315 letters)
>mm_chr1_36265981_36266695
Length = 715
Score = 586 bits (303), Expect = e-172
Identities = 309/311 (99%)
Strand = Plus / Plus
Query: 5 gaattccagaacaaccaggactacaaaggaagacctcactcaaacaataccaataacata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaacaaccaggactacaaaggaagacctcactcaaacaataccaataacata 264
Query: 65 ggccaggcatggtgttgcatgcctttaatcccagaactcaagagacaggtgaatctctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 ggccaggcatggtgttgcatgcctttaatcccagaactcaagagacaggtggatctctgt 324
Query: 125 gagtttgaggccaacctggtctacaatcaagttccaggacaactggggctacacagagaa 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagttcgaggccaacctggtctacaatcaagttccaggacaactggggctacacagagaa 384
Query: 185 accctgtctcaaaaaaaactaaacaaacaaacaaatatatattaaagaaaaaacttccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accctgtctcaaaaaaaactaaacaaacaaacaaatatatattaaagaaaaaacttccca 444
Query: 245 ttggctgatggaacactatctctattgcatgtttttaagtctacttactatacactttgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggctgatggaacactatctctattgcatgtttttaagtctacttactatacactttgg 504
Query: 305 cttcttttttc 315
|||||||||||
Sbjct: 505 cttcttttttc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_d20.g1 MSMg01no196_d20.g1 CHROMAT_FILE:
MSMg01no196_d20.g1 PHD_FILE: MSMg01no196_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:43 2005
(279 letters)
>mm_chr1_36291141_36291820
Length = 680
Score = 503 bits (260), Expect = e-147
Identities = 275/280 (98%), Gaps = 1/280 (0%)
Strand = Plus / Minus
Query: 1 tctagacctcgggtctgcagtgaaggacactctgttcattcgcacgtgttaactgtccgt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 480 tctagacctcgggtctgcagtgaaggacactctgttcattcgcatgtgttaactgtccgt 421
Query: 61 aaccgtgctcactgtgctctgtacatgcgcgaggatgcagactctgcctgtcagctgcac 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aaccgtgcccactgtgctctgtacatgcgcgaggatgcagactctgcctgtcagctgcac 361
Query: 121 aggcagggttagggacagtgcacacaagaacaagactctaggagaggaaaatgggggtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggcagggttagggacagtgcacacaagaacaagactctaggagaggaaaatgggggtgg 301
Query: 181 aggaggcaggagctgaagaacccaccaggtcttcctgtttaaagacgttcctgttctgct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 300 aggaggcaggagctgaagaacccaccaggtcttcctgtttaaagacgttcctgttccgct 241
Query: 241 tcgtaaccccccaaatctggacacttc-ttacgtttagag 279
|||||| |||||||||||||||||||| ||||||||||||
Sbjct: 240 tcgtaatcccccaaatctggacacttccttacgtttagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space: 181170
Effective search space used: 181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
