BAC Information

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BAC

Clone NameMSMg01-196F14
Chromosome1 (Build37)
Map Location 81,622,676 - 81,622,980
singlet/doubletsinglet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196F14.T7 (MSMg01no196_f14.b1)MSMg01-196F14.TJ (MSMg01no196_f14.g1)
ACCAG384493AG384494
length749737
length of high quality
(start - end)
315 (54 - 368)---
definitionCHROMAT_FILE: MSMg01no196_f14.b1 PHD_FILE: MSMg01no196_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:52 2005CHROMAT_FILE: MSMg01no196_f14.g1 PHD_FILE: MSMg01no196_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGAGGCAATTTTTCCAAGAAAAACAATTCATTGAGAA
GGCAAGAGAAGCCAGTTTGAATCAGTCAGCTTGGAGAGTTGTTTGAGCCA
AAACAGCTGAGTTGAACCAGTCAGTCAGAGTTTAGAGAGAACTAGAAAAG
GTAAGCTTATTCAGCAATAAGCCTCTGAGATAATAATTACATCTAGTGAA
TAAAAGTTATGTTTACAACAGATTTAGTTAATTAATAAATTTGAGATTTG
TGTGTGTATGCACATTCATGAGACATGGGGTACACTAAGTCAGAAGACAA
ATTCCAGTGCTAGTCTCATTTTTCCACTGCCCCCCCCCGGTGTCTTAGTA
CTATTCTCTTCTGGGTACACTACGCTAGCTGGCCCATGTGTCTAGGGAAT
TTTCCTATGTTTATCTCTTATCTCATTATAAGTGCACACAGACTATCTAA
GTATACTAGTGTGCCCAGCTGTACAGGGCTCAGGGGACTGAACTCAGTTC
CTCATGCTTTCAAGACAAGCTTTTCCTCAGCCCTTTGGTTATTCATTTTT
TACCACTGGACATATAAACCAGTGGAGGGAGCATATGGTAGCTTGATAAT
GTATTTCCCTCCTTCTCTGACGAGGCAAGTGAGTGTAGAACTGTGAAATT
TCAGTTGAGAAAACATGCCATTTGCAGACAAAGTGCTGATGACACATTN
CCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAATGGCAGGGGAACCCCTT
GGTCCTGTGGAGGCTCTATTACTCAGCATACGGGAATGTTAGGGTGATGA
GATGAGAAGAGGTGTCCATCATATTCATTGTTGCTAGGTTCCACTCTATT
TTTTTCTCCCGCCCTGATGTCCCTACTCCTCATTCAGCTGCCTTCTCTCA
CTCCAGAATCTCCCCCCCAACGCACACTTGCTATTTCGGGACCTTCTCCT
GCTCCATGGCATCCTTCTTCTGGTCGACTATAGCTACCTTCCGTCGCCAT
TATTTTTTTTTGTTCCCCCCCCCCCCCCCGCATATCCTTATGCAAATAAA
TTTTACTTTTGCCCCCACAAAAAAAAATAACTAGCCGTGTCTCTTGTTGC
TCACATTANTCGACGGGTTTCCCNCGNGATTTTATCNCCTCCCCTCCTCC
TTTTCTTTACTTGGTTTCACTTTCATCACGCCTCCTGTTCCTCGTTTTGT
TTTTCTGCGCCCCCTTTGCCCCTCTCTTTTCCCCTCGCCCCCCCGTTGTC
TTTTTTCCACCTCCCTCCCCTCCTCCCTCCCCCTCTCTCTCCCCCTCCTC
TTTTCTCCTCCGCCCCACTTCCTTCGTGCCCTCCTCCCCCGCCGCCTCCC
CCCCTCGTTCTGCACCATACCCTCCCTCCTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_f14.b1 MSMg01no196_f14.b1 CHROMAT_FILE:
MSMg01no196_f14.b1 PHD_FILE: MSMg01no196_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:52 2005
         (315 letters)



>mm_chr1_81622467_81623181
          Length = 715

 Score =  513 bits (265), Expect = e-150
 Identities = 297/311 (95%), Gaps = 6/311 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaggcaatttttccaagaaaaacaattcattgagaaggcaagagaagccagt 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 210 ggaattcagaggcagtttttccaagaaaaacaattcattgagaaggcaagagaagtcagt 269

                                                                       
Query: 64  ttgaatcagtcagcttggagagttgtttgagccaaaacagctgagttgaaccagtcagtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttgaatcagtcagcttggagagttgtttgagccaaaacagctgagttgaaccagtcagtc 329

                                                                       
Query: 124 agagtttagagagaactagaaaaggtaagcttattcagcaataagcctctgagataataa 183
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 330 agagtttacagagaactagaaaaggtaagcttattcagcaataagcctctgagatgagaa 389

                                                                       
Query: 184 ttacatctagtgaataaaagttatgtttacaacagatttagttaattaataaatttgaga 243
           ||||||| |||||||      |||||||||||||||||||||||||||||||||||| ||
Sbjct: 390 ttacatccagtgaat------tatgtttacaacagatttagttaattaataaatttgtga 443

                                                                       
Query: 244 tttgtgtgtgtatgcacattcatgagacatggggtacactaagtcagaagacaaattcca 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tttgtgtgtgtatgcacattcatgagacgtggggtacactaagtcagaagacaaattcca 503

                      
Query: 304 gtgctagtctc 314
           |||||||||||
Sbjct: 504 gtgctagtctc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)