XXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGAATCCGCGGAATTCATC
TGTTTACTCCAAACTCCCCACCCCCTCCTTTTTCTGGGTTTTCAAATTAG
ATTTCTTCCTTAAACCCAACCCCACTGCTTTTTATGGAAGCTTGAAACCA
TTCAGTGGCTTATTTGTGTTCCTCGAGGTGCAGATAAGAGATTTAACTAG
GAAGACAGAAGATTAACTCACCAGGCAGGGTGGTTCACTAAACTGGTTAG
CAGGTTCATATCTATATGGTCTCTGGGAGAACTTGGAAAGAGTTCATTTC
TTACTAAGAACATTGATGAAGATCGGGAACATGATTGCTGGAAATTGAGT
TTTGTTTATCCCTACCACCACTATCAGATAACCTGTTATTTCTCACTTAA
AAAATAAAGATGATCAAATGCTAGACAGTTTCCAATTGTATTTCGGTTTG
CATCCATGTACAGAAATAATATCTTGCTATTGTTGAATAACTCTGTAATT
TGGTTTGTAATTTAATATTAAGTGTGAAGGTTTATTTTGAGAGTTACTTA
AAACCAGATTTAATTTACTAAAACCGAAAGGGATACCTACCATTCATTGT
TTCAGGGTGCTACTGGTATGCAGCTCACACATCCGAGGCATGGTCTCTGT
CTTTTTTTTTACGTTCCAGGCTCATCTTTTATCTCATATGACGGGCTACC
TCCTTCCGCCTTACCTGCGCTTACT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCAGCCTGAGCTCCAAAGCAA
GGAAGGCAGTTTATATTAGCTATAGGGGAGAAATTCCATTTTAAAAACAG
AAAGCCATTTTTCCCTGTAATATAAGAAGAATAGACATTTAAGTTCTCAG
AAGCTGGGACATCTGAGGGACAAATAGGCCGTGACAGGGAGCTTATAAGG
CAGTGACAACAATGACACTGCACTGACAGACATCACAGACAGAATACACA
CTAAAGACGGAGCCAGAGCACCGGGCCGGCACAAGGTGCTTGTCGCAGAG
CCTGGTGACCTGATGCTGGTCCTCTGCGCAAGGGAGAATAAGCTCCTAGG
AGCTGGCTCCCTACTCCTGCACAGGTACCAGGACTCTGCAGCCTAAAGAA
TTCAAAACCATAGAGCCGGGCATGGTGGCACACGCTTTTAATCCCAGCAC
TTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGATCTA
CAGAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTCAAAA
AACAAAACAAACAACAAACAAACAAACAAACAACCCCATAACTACAAAGC
TAATGTAAACAACGGGTTACGTTGATCAGGACCTGCTGATGAAGGTTTAT
CGACTCTAACAAGAAGTGTCTACACATGCTGGAGGACG

Query= MSMg01no196_h03.b1 MSMg01no196_h03.b1 CHROMAT_FILE:
MSMg01no196_h03.b1 PHD_FILE: MSMg01no196_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:00 2005
         (193 letters)



>mm_chr1_178866366_178866958
          Length = 593

 Score =  366 bits (189), Expect = e-106
 Identities = 192/193 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccccactgctttttatggaagcttgaaaccattcagtggcttatttgtgttcctcgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccccactgctttttatggaagcttgaaaccattcagtggcttatttgtgttcctcgag 260

                                                                       
Query: 61  gtgcagataagagatttaactaggaagacagaagattaactcaccaggcagggtggttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcagataagagatttaactaggaagacagaagattaactcaccaggcagggtggttca 320

                                                                       
Query: 121 ctaaactggttagcaggttcatatctatatggtctctgggagaacttggaaagagttcat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaactggctagcaggttcatatctatatggtctctgggagaacttggaaagagttcat 380

                        
Query: 181 ttcttactaagaa 193
           |||||||||||||
Sbjct: 381 ttcttactaagaa 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no196_h03.g1 MSMg01no196_h03.g1 CHROMAT_FILE:
MSMg01no196_h03.g1 PHD_FILE: MSMg01no196_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:00 2005
         (287 letters)



>mm_chr1_178894285_178894971
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcagcctgagctccaaagcaaggaaggcagtttatattagctataggggagaaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taggcagcctgagctccaaagcaaggaaggcagtttatattagctataggggagaaattc 428

                                                                       
Query: 61  cattttaaaaacagaaagccatttttccctgtaatataagaagaatagacatttaagttc 120
           |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cattataaaaacagaaacccatttttccctgtaatataagaagaatagacatttaagttc 368

                                                                       
Query: 121 tcagaagctgggacatctgagggacaaataggccgtgacagggagcttataaggcagtga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 367 tcagaagctgggacatctgagggacaaataggccatgacagggagcttataaggcagtga 308

                                                                       
Query: 181 caacaatgacactgcactgacagacatcacagacagaatacacactaaagacggagccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caacaatgacactgcactgacagacatcacagacagaatacacactaaagacggagccag 248

                                                          
Query: 241 agcaccgggccggcacaaggtgcttgtcgcagagcctggtgacctga 287
           |||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct: 247 agcaccgggctggcacaaggtacttgtcacagagcctggtgacctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)