Query= MSMg01no196_i14.b1 MSMg01no196_i14.b1 CHROMAT_FILE:
MSMg01no196_i14.b1 PHD_FILE: MSMg01no196_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:07 2005
(449 letters)
>mm_chr1_187625998_187626846
Length = 849
Score = 702 bits (363), Expect = 0.0
Identities = 432/461 (93%), Gaps = 17/461 (3%)
Strand = Plus / Plus
Query: 5 gaattcatagagatccacctgcttctgcctctcatgtgctgagattaatggagtgagcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagagatccacctgcttctgcctctcatgtgctgagattaatggagtgagcca 264
Query: 65 ccatgccccatgcctacctaaacttcctgcaccgagattgaggattggctgttctgtgag 124
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 265 ctatgccccatgcctacctaaacttcctgcaccgagattgaggactggctgttctgcgag 324
Query: 125 cagactaagtactgaaacatgggtccatggagattgaataatttaggcaactttgttgaa 184
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 325 cagactaagtactgaaacatgggtccatggagattgaattatttagtcaactttgttgaa 384
Query: 185 gaccatattgaggcagaagataaaggaaatgccacatatttctcctgactaaggccctca 244
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 385 gaccatattgaggcagaagataaaggaaatgccacacatttctcctgactaaggccttca 444
Query: 245 ctaactctggggaattttctgccagatttgtttctgtcagaactttgttgctctctgtga 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaactctggggagttttctgccagatttgtttctgtcagaactttgttgctctctgtga 504
Query: 305 gtgattcataatttgctggatacttttaagcttgagctgttaaaaatccatcttattttt 364
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgattcgtaatttgctggatacttttaagcttgagctgttaaaaatccatcttattttg 564
Query: 365 aatattttagtgtgtat-ta-tat--ataa-------atatatacagtatatat---ata 410
||||||||||||||||| || ||| |||| ||||||| | ||||||| |||
Sbjct: 565 aatattttagtgtgtatatactatttataagtgtattatatataaa-tatatatggtata 623
Query: 411 tatat-t-taaatgtaataaaattcaagaaatacctgaaat 449
||||| | |||||| ||||||||||||||||||||||||||
Sbjct: 624 tatatatataaatgcaataaaattcaagaaatacctgaaat 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_i14.g1 MSMg01no196_i14.g1 CHROMAT_FILE:
MSMg01no196_i14.g1 PHD_FILE: MSMg01no196_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:07 2005
(522 letters)
>mm_chr1_187662878_187663799
Length = 922
Score = 938 bits (485), Expect = 0.0
Identities = 515/529 (97%), Gaps = 7/529 (1%)
Strand = Plus / Minus
Query: 1 catgacaagaggtgaaacaagaaagctcaaaagaggagtcacacagtattctggaggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 catgacaagaggtgaaacaagaaagctcaaaagaggagtcacacagtattctggaggaag 618
Query: 61 gatgatgaaccaagttgtctggaccttagctgtcaagttcaggtagagaccaggcttgaa 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 617 gatgatgaaccaagttgtctggacctcagctgtcaagttcaggtagagaccaggcttgaa 558
Query: 121 agctagggctggctcagcacagaagcaactcaatcataaactcagagtttatatctgatc 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 557 agctagggctggctcagcacagaagcagctcaatcataaactcagagtttatatctgatc 498
Query: 181 caaactcaaagctctcaggaagatgaatggagcctctctatgtaagaacacggcatcagg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 caaactcaaagctctcaggaagatgaatggagcctctctatgtaagaacatggcatcagg 438
Query: 241 gacagatgcccatcaatatgtaaatcctccattgggacccagtaaactccagacttacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gacagatgcccatcaatatgtaaatcctccattgggacccagtaaactccagacttacat 378
Query: 301 tattatttcaaacaccctgtgtctgcaatggagagatacagaaaagtggattggtgatta 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tattattttaaacaccctgtgtctgcaatggagagatacagaaaagtggattggtgatta 318
Query: 361 catcacatgtaaatttgtagcaagacgtagatgaaggataagcaaagaatagccaatggg 420
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 317 catcacatgtaaatttgaagcaagacctagatgaaggataagcaaagaatagccaatggg 258
Query: 421 gtagtaatggcctgtgtaggtagcaagaacatctccttctttataaagc-------cttt 473
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 257 gtagtaatggcctgtgtaggtagcaagaacatctccttctttataaagcctttgagcttt 198
Query: 474 gagcagtgccccaggcatgagaggctgtgatgtggtaatggtagaaggt 522
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 197 gagcagtgccctaggcatgagaggctgtgatgtggtaatggtagaaggt 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
