BAC Information

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BAC

Clone NameMSMg01-196J23
Chromosome1 (Build37)
Map Location 67,817,187 - 67,817,475
singlet/doubletsinglet
Overlap genenone
Upstream gene1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196J23.T7 (MSMg01no196_j23.b1)MSMg01-196J23.TJ (MSMg01no196_j23.g1)
ACCAG384669AG384670
length790742
length of high quality
(start - end)
254 (46 - 299)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no196_j23.b1 PHD_FILE: MSMg01no196_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:14 2005CHROMAT_FILE: MSMg01no196_j23.g1 PHD_FILE: MSMg01no196_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTAGCTCTTAGATCCCATTTTTTGATTGAGTTGTTTGGCT
TTTTGGAGGTTAGCTTATAGATCATTTTACATTTACAGGTCTGAGGGATA
AGGAGACTCAGGCTGTTGTGTTGAATTATTTTGTTATAAATAAAATATTA
TTTAAGAAATCTAATGACCTGCTGAAAGTGATTCATTGTGGCAGGAATGA
ACGTTTAAATAAAAACTAATGCTTATGAAAGTATTTTTTTTTTTTATAAA
ACTTGGAGAAATTACATATGACAAATTTTATAAGATAATGCACTGTGTAA
AACTATAATATTTTGTTTTTTTTTTACCCCCCCCCCCCTCATTAATTTAT
GTTATCTTGACATGTCACTGCCCCCCCCCTAAAAAAATAAATTTTATGTG
GATTTTTTATCCGACCACTGACAATTTTCCTTTTAATTCGATATGGCTCT
TAATTCTCAACACCTTGTTTTTTCATTTCCCTTCCTTTCCCCATTTATCC
ATTTTTTCTCTCCTCTTTTCCCCCCCCTTCTTCCCTTTCTGCTCCTTTTT
TCTTTTTCTTATTTCCCCCTTTTCTCCCTTTTTTTTTCTCTCTTCCCCTC
TTTTTTCACCTCCCTGCCTAACCCCATTGTTTTACTCTCCCTTTTTTTTA
ATAATCTCTACTAACCCTAGTTAATTTATTCTTCTTGCATTTTCTTTTTT
ATATTTCATTCTTTTTTCTCTCCCCCTCTTCTTTTCCGCN
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTGGATCAGTATGATATTA
ATTTTGTGGAATTCCTCCCGCCTCTGTCGCCCAAGTACCACGATTTCAGG
TGTATATCCCCATTCATCTGAATCTTTAAACCCACTTCTGTTTTGTGACC
TCATCAAAACAGTATTTCTCTTAGGAAAGCTAGTCCTACTAATGGAGAAT
AATTCCTACATTTAGTCATTTCTGATCTTAATAATGTTCTGGCAGTTGCA
GAATGACATAGACAAATGTAGGCAATGCTTTTGTCTCATAAGGATTTATA
TCTTTTTATGGATTGTTTATCATTTACGCCCCCACATTGTAGTCTAGTTT
TATCAAGCCCTGTGTTCCATCCCCAACCTTAAAACTAACACAATATATAC
CTTATACAGAAATTGTAAGGGCATCATTTCAATAAATGGCTAAGGGTGTA
CAGTATAATTCTACTAAAGTTGACATTGGCGAAGAAGGAATGTCTAATGA
ATGTGTACTACCAAGAACATAAGTATTAATATTCTGACCTTATTTACGAA
GAATTTAAAATATTAGCAACGTCGCACTTTATTACTATTTTATTATGCCA
CTTTTACTTATTACTTCACATGTGCTTCTTTTCCCATTTTCACCCCCTCA
CTTTTTGTTCTATCTGATTCCACTTCACCTCTAACATCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_j23.g1 MSMg01no196_j23.g1 CHROMAT_FILE:
MSMg01no196_j23.g1 PHD_FILE: MSMg01no196_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:14 2005
         (292 letters)



>mm_chr1_67816987_67817678
          Length = 692

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtggatcagtatgatattaattttgtggaattcctcccgcctctgtcgcccaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 actatgtggatcagtatgatattaattttgtggaattcctcccgcctctgtcgcccaagt 430

                                                                       
Query: 61  accacgatttcaggtgtatatccccattcatctgaatctttaaacccacttctgttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 accacgatttcaggtgtatatccccattcatctgaatctttaaacccacttctgttttgt 370

                                                                       
Query: 121 gacctcatcaaaacagtatttctcttaggaaagctagtcctactaatggagaataattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gacctcatcaaaacagtatttctcttaggaaagctagtcctactaatggagaataattcc 310

                                                                       
Query: 181 tacatttagtcatttctgatcttaataatgttctggcagttgcagaatgacatagacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tacatttagtcatttctgatcttaataatgttctggcagttgcagaatgacatagacaaa 250

                                                            
Query: 241 tgtaggcaatgcttttgtctcataaggatttatatctttttatggattg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgtaggcaatgcttttgtctcataaggatttatatctttttatggattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)