BAC Information

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BAC

Clone NameMSMg01-196O01
Chromosome1 (Build37)
Map Location 100,829,088 - 100,829,376
singlet/doubletsinglet
Overlap genenone
Upstream genePam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196O01.T7 (MSMg01no196_o01.b1)MSMg01-196O01.TJ (MSMg01no196_o01.g1)
ACCAG384819AG384820
length732748
length of high quality
(start - end)
513 (56 - 568)290 (86 - 375)
definitionCHROMAT_FILE: MSMg01no196_o01.b1 PHD_FILE: MSMg01no196_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:34 2005CHROMAT_FILE: MSMg01no196_o01.g1 PHD_FILE: MSMg01no196_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCNAACCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAAGGCCCATACCTAACCATGATAAAAGCAATCTAC
AGCAAACCAGTAGCCAACATCAAAGTAAATGGTGACAAGCTGGAAGCAAT
CCCATTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTCT
TCAACATAGTACTTGATATCCAACCAGAGCAATTTGACAACAAAAGGAGA
TCATCGGGATACAAATTGGAAAAAACGAAGTCAAAATATCACTTTTTGCA
GATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACT
CCTAAACCTGATAAACACCTTCAGTGAAGTAGCTGGATATAAAATTAACT
CAAACAAGTCAATGGCCTTTCTCTACACAAAGGATAAAAAGGCTGAGAAA
GAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATA
TCTTGGCGCGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACT
TCAAGTCTCTGAAGAAAGAAACTAAAGAAGATCTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGCAGGATCAACATTGTAAAAATGGATATCTTG
CCAAAAGTAATCTACAGATTCAATGCCATCCCCATCAAAATTCCAACTCA
ATTCCTCAATGAATTACAAAGAGCAATCTGCA
CCCAAATCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTCACTAATAT
GTTTATTAATTTGATGTTATTTGGGCTAGAGGATGGAAACTTGAGAAAAT
GGTGCATAGTCTGATTAAGTGGATCATTGTATGTGCACTTTGAAAAATGT
ACTAAAGCAGTGGGTCACAACATATCCATAGTCAAGAGCAAAGGACAAAT
GACTAAAGCATGCCTGCTAGTGGTCAGTTTGCTTTCCCATTTTCATTCAC
TCCAGGGCCTAGACTATGAAACAGTCCTCCTCACATCATGTTGCATTTTC
CCACCAACTAAGAAAACCTCTCACTTATATGCTCACACACCCCTACAATG
TACATTATCCCAAATTGAGACACCTTTCCCAGTGAGTATATTTTTTGTCA
ACTCACCATTAAAAACAAGCCATCACACTGATTAACACACCGGCTTACCT
AAGTTAGAAAAGTAATTCCATTCATATATCTATTTTTTTCCTTATATAAG
ATCTGTCCTATAGCTGACCGCGACCTCCATGTACGCTTACCAATTTGACA
ATGTTCCACTTTTTCCTCAATGTTACGCAATTTTTCTCCCCTTTTTCCAA
TTTTTCCCCTCCCTTGCCCTTTTTTCCTTCCTATTCCCCTCCTCCCTTTT
ACCCTTCCGCACTTCCCTCCCTTTCCTTTTCTTTTTCCATTTCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_o01.g1 MSMg01no196_o01.g1 CHROMAT_FILE:
MSMg01no196_o01.g1 PHD_FILE: MSMg01no196_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:34 2005
         (290 letters)



>mm_chr1_100828888_100829577
          Length = 690

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaattcactaatatgtttattaatttgatgttatttgggctagaggatggaaacttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctaattcactaatatgtttattaatttgatgttatttgggctagaggatggaaacttgag 430

                                                                       
Query: 61  aaaatggtgcatagtctgattaagtggatcattgtatgtgcactttgaaaaatgtactaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 429 aaaatggtgcatagtctgattaagtggatcattgtatgtgcactttgaaaaacgtactaa 370

                                                                       
Query: 121 agcagtgggtcacaacatatccatagtcaagagcaaaggacaaatgactaaagcatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agcagtgggtcacaacatatccatagtcaagagcaaaggacaaatgactaaagcatgcct 310

                                                                       
Query: 181 gctagtggtcagtttgctttcccattttcattcactccagggcctagactatgaaacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gctagtggtcagtttgctttcccattttcattcactccagggcctagactatgaaacagt 250

                                                            
Query: 241 cctcctcacatcatgttgcattttcccaccaactaagaaaacctctcac 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cctcctcacatcatgttgcattttcccaccaactaagaaaacctctcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)