NNCCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGGCCAACCCAGTCTGCAAATCGAGTTCCAGGACAG
CCAGGGCTACACAGAAAACCCTGTGTCAAAAACAAAAACAAAACAAAAAA
AGGTCTGTTTTTAAAAACTGTTGTTGTAGAGTTGTTAAAAGCAGTAATTA
TCATATTATAAATGAAGGGAATGAAGAATTCAAGTTAAGAGAATGCTTCA
GTAATCAGATGCTATCATTAGATCTAGCTATAAAATATCAAATGTAGTGA
TCAAATCAGTCATCCACTACATATTAAGGTTTTGGTCAGTGATGGGCCAC
ATATACCACAGTAGATCTTTAAGATTATAATGAAGCTGAAAAACTATTGT
CCAAGGACAATGAAGTCAACATAACACCCAGGAACATCATATCATTTATG
TTGGTGGTAGTGTTCTGTAAACAAACTGCCTGTATTACATGTGAAGCTAC
AGAACATAATTGTGTACAATATATAGTCACTGATGATAACATGTTACTGG
CTTATGCATTTATTGTATACACTTTTTACCATTTTTTACCGTTATCCTAT
TACCACAAGGTCACTGTCAAATTTTCTTCCCTCGCTGTCCATATCCCTCT
GTACATAATTCTCATATTGTTCTACCCTGTCTTTCCACACAATTTACCCC
CAGTTCCATTCCTTTTCACCCCCTTTTCCCTTTACCACCCTATCCCCCTT
TTCCG

NNNCCACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGTCACAGGTTAA
AGGTTTCCAAGGAGTTGGGGGGAAAAAAGGAGTAATGTCAAGTGCCCTCA
CACTTCAAATCAAAGAGCCAGATGACCCACTGAACCTGCCAGCCCAGCCG
CCATCCATCTCTGCCGCGGAAAGGAGCAGGAGTTTAGTATTCAGGAGATC
TGACTGTGAGAAAAATGGGTGGAGTGGTGCGTACCTGCCCCATTCCTGGA
GTTAGTCTTCTTGGCCTCAGGCACAGGTAATATGCTTTAAAGGAACAAGG
CTAACTTGACATTTCCTGATATATGGCTAACTGCCGCGCGACCCCGTAGG
GTGAAATGCAACTTGAGGAGCCAACCCTATATCAAAAAAGCAGAGGGGGA
AACAGTATTAAAAGTACTAAATTAGTAAGAAAAGAAAATGGGTGCTGCTC
TAAGAAAAAAGCCTGGGTCTTGAGGCTCAGTATAGGCTAAAGTCCGAAGG
CATTCATAGATGAAAAGTAAACATGCTTATTCACTCCACGCACCGTATCC
GCGTCTATTTTTCTATTGTCCGTGCTTCTCCGGCAAATTCTCGCCGTTAT
TACCGCCTTTATCCCTATTTTCACCCTTCCTTCCCATTTTTCCTTCCACT
TCCCTTACTCCCTTTTCACCTTCCCCTTTACGCCCTTTTCTTTTAATTCT
CCATTTTCCTTG

Query= MSMg01no196_o17.b1 MSMg01no196_o17.b1 CHROMAT_FILE:
MSMg01no196_o17.b1 PHD_FILE: MSMg01no196_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:37 2005
         (466 letters)



>mm_chr1_157204269_157205134
          Length = 866

 Score =  886 bits (458), Expect = 0.0
 Identities = 461/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggccaacccagtctgcaaatcgagttccaggacagccagggctacacagaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggccaacctagtctgcaaatcgagttccaggacagccagggctacacagaaa 264

                                                                       
Query: 65  accctgtgtcaaaaacaaaaacaaaacaaaaaaaggtctgtttttaaaaactgttgttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accctgtgtcaaaaacaaaaacaaaacaaaaaaaggtctgtttttaaaaactgttgttgt 324

                                                                       
Query: 125 agagttgttaaaagcagtaattatcatattataaatgaagggaatgaagaattcaagtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagttgttaaaagcagtaattatcatattataaatgaagggaatgaagaattcaagtta 384

                                                                       
Query: 185 agagaatgcttcagtaatcagatgctatcattagatctagctataaaatatcaaatgtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagaatgcttcagtaatcagatgctatcattagatctagctataaaatatcaaatgtag 444

                                                                       
Query: 245 tgatcaaatcagtcatccactacatattaaggttttggtcagtgatgggccacatatacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgatcaaatcagtcatccactacatattaaggttttggtcagtgatgggccacatatacc 504

                                                                       
Query: 305 acagtagatctttaagattataatgaagctgaaaaactattgtccaaggacaatgaagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acagtagatctttaagattataatgaagctgaaaaactattgtccaaggacaatgaagtc 564

                                                                       
Query: 365 aacataacacccaggaacatcatatcatttatgttggtggtagtgttctgtaaacaaact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacataacacccaggaacatcatatcatttatgttggtggtagtgttctgtaaacaaact 624

                                                     
Query: 425 gcctgtattacatgtgaagctacagaacataattgtgtacaa 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctgtattacatgtgaagctacagaacataattgtgtacaa 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_o17.g1 MSMg01no196_o17.g1 CHROMAT_FILE:
MSMg01no196_o17.g1 PHD_FILE: MSMg01no196_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:37 2005
         (285 letters)



>mm_chr1_157297282_157297966
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttgtcacaggttaaaggtttccaaggagttggggggaaaaaaggagtaatgtcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cttttgtcacaggttaaaggtttccaaggagttggggggaaaaaaggagtaatgtcaagt 426

                                                                       
Query: 61  gccctcacacttcaaatcaaagagccagatgacccactgaacctgccagcccagccgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gccctcacacttcaaatcaaagagccagatgacccactgaacctgccagcccagccgcca 366

                                                                       
Query: 121 tccatctctgccgcggaaaggagcaggagtttagtattcaggagatctgactgtgagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tccatctctgccgcggaaaggagcaggagtttagtattcaggagatctgactgtgagaaa 306

                                                                       
Query: 181 aatgggtggagtggtgcgtacctgccccattcctggagttagtcttcttggcctcaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatgggtggagtggtgcgtacctgccccattcctggagttagtcttcttggcctcaggca 246

                                                        
Query: 241 caggtaatatgctttaaaggaacaaggctaacttgacatttcctg 285
           ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 245 caggtaagaggctttaaaggaacaaggctaacttgacatttcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)