Query= MSMg01no197_b24.b1 MSMg01no197_b24.b1 CHROMAT_FILE:
MSMg01no197_b24.b1 PHD_FILE: MSMg01no197_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:53 2005
(681 letters)
>mm_chr1_117371772_117372851
Length = 1080
Score = 1172 bits (606), Expect = 0.0
Identities = 659/677 (97%), Gaps = 1/677 (0%)
Strand = Plus / Plus
Query: 5 gaattctaattttccatatggttttagttgagtgtttatttatttctccatgtgattgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaattttccatatggttttagttgagtgtttatttatttctccatgtgattgca 264
Query: 65 cacctgtggacacacagagtataatttatgacagtcatttcctctttttaacatgtatgt 124
|||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 cacctgtggata-acagagtataatttatgacagtcatttcctctttttatcatgtatgt 323
Query: 125 cccagaaaatatcaggttagctgccttggaaataggtgtctttatctactgacccatctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccagaaaatatcaggttagctgccttggaaataggtgtctttatctactgacccatctc 383
Query: 185 actgtgcaagcccaattgctaccccatgccaaaaaataatgttttcttgctggtgtgtgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgtgcaagcccaattgctaccccatgccaaaaaataatgttttcttgctggtgtgtgt 443
Query: 245 gatctaaagcatttctttggaaatttcattgttctcttttataccctattatgatacttc 304
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatctaaagcatttctttaaaaatttcattgttctcttttataccctattatgatacttc 503
Query: 305 tactctttgttttattctgagaacattatttattctttcttttctcataaattgcatcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 tactctttgttttattctgagaacattatttattctttcttttctcataaattacatcac 563
Query: 365 aatgccagccatccatacttccaatctgtctagtcaccccattacctcccctccgcaagg 424
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 564 aatgacagttatccatacttccattctgtctagtcaccccattacctcccctccacaagg 623
Query: 425 ttcactccatctccattttccttcaaaaaagaggaggcatcaaagtgctatgaagtgaac 484
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 624 ttcactccatctccattttccttcaaaaaagaggaggcctcaaagtgctatcaagtgaac 683
Query: 485 acagcatagtaaattataagactaggtataatccctcatatcaaggctaaacaaagcagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acagcatagtaaattataagactaggtataatccctcatatcaaggctaaacaaagcagc 743
Query: 545 ctactaagactgaaagagttccaagaacagacacaagattcagacacaccatcccattat 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 744 ctactaagactgaaagagttccaagaacagacacaagattcagacacaccatcccactat 803
Query: 605 cattgttagacgttctacaagaaactcaagcaacacaacgataacatattanaggacttg 664
||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 804 cattgttagacattctacaagaaactcaagcaacacaaccataacatattaaaggacttg 863
Query: 665 aggacttttgggaacaa 681
|||||| ||||||||||
Sbjct: 864 aggactgttgggaacaa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_b24.g1 MSMg01no197_b24.g1 CHROMAT_FILE:
MSMg01no197_b24.g1 PHD_FILE: MSMg01no197_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:53 2005
(341 letters)
>mm_chr1_117468671_117469411
Length = 741
Score = 630 bits (326), Expect = 0.0
Identities = 335/338 (99%)
Strand = Plus / Minus
Query: 2 agaccctgaactctatccataaactgcaagccaaaataaactctttaatctttaacttgt 61
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 636 agaccctgaactatatccataaactgcaagccaaaataaactctttaatctttgacttgt 577
Query: 62 tttttctgggtgtttttacaatagcagcagggaaaaatataaaataaaattaatattcct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tttttctgggtgtttttacaatagcagcagggaaaaatataaaataaaattaatattcct 517
Query: 122 tcttcaagcttaaaaaaatatgcttactaaccccatcagtgaggatgcaaactcatgaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcttcaagcttaaaaaaatatgcttactaaccccatcagtgaggatgcaaactcatgaga 457
Query: 182 taattagttcctaaagcacctctctcatcacatttgagtttgtaatgtcttcagtgtagg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 taattagttcctaaagcacctctctcatcacatttgagtttgtaatgtcttcagtgtagg 397
Query: 242 gtgaccacatatgcttatgtgtaaagtattttgtgggaagttggtgatattattttgaca 301
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 396 gtgaccacatatgcttatgtgtaaagtattttgtgggaagttggtgatactattttgaca 337
Query: 302 gtttctgaaaactttaggaggcttctagccgaggaagg 339
||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtttctgaaaactttaggaggcttctagccgaggaagg 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
