BAC Information

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BAC

Clone NameMSMg01-197H07
Chromosome1 (Build37)
Map Location 186,180,143 - 186,180,424
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197H07.T7 (MSMg01no197_h07.b1)MSMg01-197H07.TJ (MSMg01no197_h07.g1)
ACCAG385179AG385180
length677723
length of high quality
(start - end)
319 (12 - 330)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no197_h07.b1 PHD_FILE: MSMg01no197_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:21 2005CHROMAT_FILE: MSMg01no197_h07.g1 PHD_FILE: MSMg01no197_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCCTATCCGGAGAGGATCCGCGGAATTCACTATATTTAATATGGAAC
CACAAATGACCCAGAAAAACCAAAATAATCTTAAGAAAGCTGAGCTGTAC
TGGAAGCCTTGTGCTTCCTAGCATCTACCCACACGAGAAAGCCATACAGT
CAACATGGTGTGGCTGTTGCATATTTATAAGCACAGACGTTAAGACAACA
GAAGAGAAGCAGAAGACAGATAGAACCAATACAGATGAGGTCATGTGATT
GCCAGTGGTAGTGCAAAGGGTCCACAGGTTGGTACATCATCTTTCTAAAG
CAAGATTGAGATAACTCAATAGCCATGTTCTTAATAACTTACCCNATCAA
CCCCAAGGTATTTGTACATCCAAACAACATTATCAATACTGCGAAATAAA
ACATAACCAATAGTAGGCAATGATAAAATAATCCACCTCCTGGGGTACAT
GGAGGGAGGTCTTGCTATATTATGGCAACCACTATGAGGTTAAAAACAGC
CCAACTCCATTGATGGATGAGTAGACGAGAGTCTTGAGTGTGCTAGGGAA
TATTCTGACTTCGAAAAGAAGGGAATTCTGTTAAATGCTACAACATTGAT
GGAGATCAGGGATAAGATAAATACAGATCCAGTATCACAGAAAGTCAAAG
GCCACCTGATATCTCCTGTTCAGAACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGCAGGCTACTATTAAAGATC
AATTTTAGAAGAGAGAAAGAAAACTCAAGGAGAGATGACTTGCACCAAGG
TCCAGCGCTTTGGTGAGATGCAGGCTCAAGCACTCTGACTCTGGGTGAGT
GGGTTGGTGGGGCACAGTTGAGGCTGTGATATGCTACCTATCAGCGTGAA
GAAGAAGTCTTATGGGTCGCCCCAGTGCTAGAGAGACAGCTCAACGGTAA
AGTGTTTGCTGAGAAAACATAAGGAACCTAGCATGGATACCCAACACCCA
ATTAAAAGTTTTTTGTACGCACCCCGCCCCCTGTTACCTCTACGCTGGGG
AAGGCAGAGATGGATTGACCCAGAAACTCACTGGCCAGCCAGGTTAGCCA
GTTCAGGATCAGTGAAAAGACCCTGTCTGGGATATAATGTGGGCAGCAAT
AGAGGAATATCTATTAAAATATCAAAGCCAAGCTCTGTTGTTGATAAGCC
AGTGCACCCTACACACAGGCATGCACTCATGCACACACGTGTACACACAC
ACACACACACCACATGGGGATAATATTCAGTCAAAGAAGAAAATGGTTAG
GAAACTTAACATGTAATCAAAGTTTTATATGATTGAAATTAATATTTTAA
AGTATTTAATTGGGTAAGAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_h07.g1 MSMg01no197_h07.g1 CHROMAT_FILE:
MSMg01no197_h07.g1 PHD_FILE: MSMg01no197_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:21 2005
         (282 letters)



>mm_chr1_186180025_186180706
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgcaggctactattaaagatcaattttagaagagagaaagaaaactcaaggagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttctgcaggctactattaaagatcaattttagaagagagaaagaaaactcaaggagagat 341

                                                                       
Query: 61  gacttgcaccaaggtccagcgctttggtgagatgcaggctcaagcactctgactctgggt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gacttgtaccaaggtccagcgctttggtgagatgcaggctcaagcactctgactctgggt 281

                                                                       
Query: 121 gagtgggttggtggggcacagttgaggctgtgatatgctacctatcagcgtgaagaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gagtgggttggtggggcacagttgaggctgtgatatgctacctatcagcgtgaagaagaa 221

                                                                       
Query: 181 gtcttatgggtcgccccagtgctagagagacagctcaacggtaaagtgtttgctgagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gtcttatgggtcgccccagtgctagagagacagctcaacggtaaagtgtttgctgagaaa 161

                                                     
Query: 241 acataaggaacctagcatggatacccaacacccaattaaaag 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 acataaggaacctagcatggatacccaacacccaattaaaag 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)