NAATCGATGACAGAGATAGACAATACCTGCATGTGGGTCGGCGAATATAA
AAAAATCAAAAATTGCGGCCGGCTAAAGAATCAAAATCCGGACCGANAGG
NGGAANNNNNNNTTTTCCCAGAGAAGGAGGGGNAAAGAGNGGAGNAGNGG
NGGAAGGAAAGNNNANTTTGACCCCGAANAAAGGAGGGANNNANNNNANN
GGNAGAAANNAAANNNAGAAAANANNANGGAGGNNAAGAAGNNNNNNNNG
GAAGGAAGAGGAGAAGNNNGGNNAGAGNNGGANNAANANAGAGGNAGAAG
GTTTTTGTTAAANATNAAAATGAGAGAAGAGAAATATGTGGAGGAGTTAG
GGTAAGGAATGAAAGAGTTTTTTTTTTTAGAAANGNGAAAGGGAGAAAAA
AGNANAATATTTTTTAAAGCTCCCAGGGAGTAAAGCAGCAATCAGAGAGT
ACACATTAGGGGATCCATGCCTAAAGATGAATATGTAGTAGAGGATTGGC
TTATCTGACATAAATGGGAGGGGGTCCCTAGATCAAGAGGATGTGAAAAC
ACCTCGCATAGGAGAACAGTACGGTGCAAATGTGAGAGGTTAGGTAAAGA
TTATATAATGAAATAGGAACGGGGATAAAGGGAAGAGCGATAGAAAAAAA
AAGTAAATGGGTATAAGAAGCAAACAACTATGAAAATATGTAGTGATAAG
GAAAAGAGAGTGGAAACTGAAAGTTGTATGTTTTGATTATCCGGAAAAAA
GNGAGAAAAATGTGAGAGAATTAGTGAGTGAGAATAAAAAATAAAATGGA
GATAAAGACG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACATTTTTGTCCATGACAGAGAT
GAAAGAAGTGAGAAATAGTAGAAAGCCTACCAATTTTCAACTGTACTATG
CAATTCTGAAAATTTTGGGTTAGGAAGGATATAAAAGGACACATCTTCTC
CAACGTACACTACGTATTTTAAGTTGGTGGGTATTGGAACTCTCATCGTA
GATAGAGCACCAAACACTTTTTTTGCAAAATTTAAAAATTAACATAGAAT
GTTAAGCTAATTTTTAATTTTCAAGATTGTAGTGTTTGAATCATTATAAC
GACTGACTAATGAGTAGATGTATTCTTCAGTCCTAGTATTTCTGATTGCA
TGAAGACTGGCATCTCACCAAGTTCATTCATTCCCATAATCCAAGTGTCA
GAAAGAAACTTGATGCAGAGTTGTTGTTTAATAAAACTTTGTTAAAGTTT
ATTCAAATAACCGAATACATTTTATGATTGAACAGGAAATCAGAGAAAGT
ATTTGTCAAAATGTTATTGATGTCCATGCATGCAGATATAAAATTTTCAC
TCTTTCCTAAAGTGCTTGACTAAAACTCTTCCAAAGATTTTCAATTAAGA
ATAAGAAATGAGGACATGACTCAGTGGTTATTGGCACTTGGTGCTCTTAC
AGAGGACCTGAGTTTAGTTTTCAACACCCACATGATGGATCAAAGCCAN

Query= MSMg01no197_j05.g1 MSMg01no197_j05.g1 CHROMAT_FILE:
MSMg01no197_j05.g1 PHD_FILE: MSMg01no197_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:30 2005
         (665 letters)



>mm_chr1_18838083_18839147
          Length = 1065

 Score = 1270 bits (657), Expect = 0.0
 Identities = 663/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatttttgtccatgacagagatgaaagaagtgagaaatagtagaaagcctaccaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tacatttttgtccatgacagagatgaaagaagtgagaaatagtagaaagcctaccaattt 723

                                                                       
Query: 61  tcaactgtactatgcaattctgaaaattttgggttaggaaggatataaaaggacacatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tcaactgtactatgcaattctgaaaattttgggttaggaaggatataaaaggacacatct 663

                                                                       
Query: 121 tctccaacgtacactacgtattttaagttggtgggtattggaactctcatcgtagataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 662 tctccaacgtacactacgtattttaagttggtgggtattggaactctcatcatagataga 603

                                                                       
Query: 181 gcaccaaacactttttttgcaaaatttaaaaattaacatagaatgttaagctaattttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gcaccaaacactttttttgcaaaatttaaaaattaacatagaatgttaagctaattttta 543

                                                                       
Query: 241 attttcaagattgtagtgtttgaatcattataacgactgactaatgagtagatgtattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 attttcaagattgtagtgtttgaatcattataacgactgactaatgagtagatgtattct 483

                                                                       
Query: 301 tcagtcctagtatttctgattgcatgaagactggcatctcaccaagttcattcattccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcagtcctagtatttctgattgcatgaagactggcatctcaccaagttcattcattccca 423

                                                                       
Query: 361 taatccaagtgtcagaaagaaacttgatgcagagttgttgtttaataaaactttgttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taatccaagtgtcagaaagaaacttgatgcagagttgttgtttaataaaactttgttaaa 363

                                                                       
Query: 421 gtttattcaaataaccgaatacattttatgattgaacaggaaatcagagaaagtatttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtttattcaaataaccgaatacattttatgattgaacaggaaatcagagaaagtatttgt 303

                                                                       
Query: 481 caaaatgttattgatgtccatgcatgcagatataaaattttcactctttcctaaagtgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caaaatgttattgatgtccatgcatgcagatataaaattttcactctttcctaaagtgct 243

                                                                       
Query: 541 tgactaaaactcttccaaagattttcaattaagaataagaaatgaggacatgactcagtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgactaaaactcttccaaagattttcaattaagaataagaaatgaggacatgactcagtg 183

                                                                       
Query: 601 gttattggcacttggtgctcttacagaggacctgagtttagttttcaacacccacatgat 660
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 182 gttattggcacttggtgctcttacagaggacctgagttaagttttcaacacccacatgat 123

                
Query: 661 ggatc 665
           |||||
Sbjct: 122 ggatc 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)