CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTGATTTGGGTAGAGTGATTGGCAATGCATAACTTTGTTCACTTTT
CTTGCTAAAATATGGCCAGATGTGTTAAATACATATGATCTGACAAGATT
ATGACGAATTTTGAAACAAGGCAAGACTTGGAAATTTGCTAATAAGTATA
CTTACACAAAAAGTATATGGAGAGACTTTGCCTGAAACAGAAACATAAAA
CTATGTAGAAGGCTTAACAATCAATTCAAGAGAATGATTCATTCTGAATA
TATCATTTTTTTATTTTCCTAGACATCTCTCTCATTTATCAATGAGCTCT
TGTTTTTTTTTGACACCGCCGCCATAAATTATACAACATGAATTTCCATT
CTTTGACTTGGCTATAGGCAAAAGTGGTCAGACTGATAGTATCTTGACTT
GATGGGTGAGATAGCATTTCATTTTTCTACACTAAGAAGAATTACAAATG
TAAAACATACTGCACATCATGATCTTATATAGTTATACATCTGACCATAT
CTTATCAAGACAAGCAAACAGCATTGTACATTCCTAAATATTCTGCCCAA
TGCATAGCATTTATATGGCTCTGGTAGAATGGTCCAACCACCCTCATCAG
CCTTTAGGTAGGTGTATATGTAGATATTACAACTA

CGATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTGAAAAACACACTTTGCTCTTATC
TTTATCTTCTAACATTTACCGCCCATCTCTCTATCCTCCCTTCCATATCC
ATCACTACATTCCTTTACTTATTCAACAAATACTTATTAAGCCCATAGTA
CATGCTGAGCACATTCCATGCCTCGGTAAGACCCAGAGCAGGAGCAAAGT
TACCTATGCCTTGGAGAGCTTATACTGTCCTGAAGGAGGAAGATGTAGTA
TGCCAAATAGAAGTAAATCCCAGAGCAAGATGAAGTAAAAAGGCAGGTGA
ATACAAGGTTCTGTATGGACTTCCTGTTCATAGGCTATTTAATTCATAGG
TACGGATTACTCTGAAGGAGAGAGTCCCGGGAATGTTTATGGAGGCTGGT
CTGGCTACAGCATACCATGAGAAGAACAATGGGCATGTGCTTGGGGAAGT
GAGAAAGGAGCTGTGATGGGGATGCATATCCCACTGTACACATGATAGCT
TTAAAAGGAGAAGCTGCATGACCCAGGGAATACGATTAAAGATGTTTGGC
TCTAAAGTCGAGAACACACTGCAGGACACCCAAACAGAGGGCCAACTTGG
AGGTTATTAGAGTAACCCAGGTAAGACCACAATGAAACCTCATAGGTCAC
AGTGGGAAAGAACTAATCTACA

Query= MSMg01no197_m19.b1 MSMg01no197_m19.b1 CHROMAT_FILE:
MSMg01no197_m19.b1 PHD_FILE: MSMg01no197_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:48 2005
         (309 letters)



>mm_chr1_170876862_170877570
          Length = 709

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaattatacaacatgaatttccattctttgacttggctataggcaaaagtggtcagac 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ataaattatacaacatgaatttccattctttgacttggttataggcaaaagtggtcagac 260

                                                                       
Query: 61  tgatagtatcttgacttgatgggtgagatagcatttcatttttctacactaagaagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatagtatcttgacttgatgggtgagatagcatttcatttttctacactaagaagaatt 320

                                                                       
Query: 121 acaaatgtaaaacatactgcacatcatgatcttatatagttatacatctgaccatatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaatgtaaaacatactgcacatcatgatcttatatagttatacatctgaccatatctt 380

                                                                       
Query: 181 atcaagacaagcaaacagcattgtacattcctaaatattctgcccaatgcatagcattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaagacaagcaaacagcattgtacattcctaaatattctgcccaatgcatagcattta 440

                                                                       
Query: 241 tatggctctggtagaatggtccaaccaccctcatcagcctttaggtaggtgtatatgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatggctctggtagaatggtccaaccaccctcatcagcctttaggtaggtgtatatgtag 500

                    
Query: 301 atattacaa 309
           |||||||||
Sbjct: 501 atattacaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no197_m19.g1 MSMg01no197_m19.g1 CHROMAT_FILE:
MSMg01no197_m19.g1 PHD_FILE: MSMg01no197_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:48 2005
         (527 letters)



>mm_chr1_170919629_170920555
          Length = 927

 Score =  942 bits (487), Expect = 0.0
 Identities = 505/511 (98%)
 Strand = Plus / Minus

                                                                       
Query: 17  tttgctcttatctttatcttctaacatttaccgcccatctctctatcctcccttccatat 76
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 927 tttgctcttatctttatcttctaacatttaccgtatatctctctatcctcccttccatat 868

                                                                       
Query: 77  ccatcactacattcctttacttattcaacaaatacttattaagcccatagtacatgctga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ccatcactacattcctttacttattcaacaaatacttattaagcccatagtacatgctga 808

                                                                       
Query: 137 gcacattccatgcctcggtaagacccagagcaggagcaaagttacctatgccttggagag 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gcacattccatgcctcggtaagacccagagcaggagcaaagttacctatgccttggagag 748

                                                                       
Query: 197 cttatactgtcctgaaggaggaagatgtagtatgccaaatagaagtaaatcccagagcaa 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cttatactgtcctgaaggaggaagatgtagtatgccaaatagaagtaaatcccagagcaa 688

                                                                       
Query: 257 gatgaagtaaaaaggcaggtgaatacaaggttctgtatggacttcctgttcataggctat 316
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 687 gatgaagtaaaaaggcaggtgaatacaaggttctggaaggacttcctgttcataggctat 628

                                                                       
Query: 317 ttaattcataggtacggattactctgaaggagagagtcccgggaatgtttatggaggctg 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttaattcataggtacggattactctgaaggagagagtcccgggaatgtttatggaggctg 568

                                                                       
Query: 377 gtctggctacagcataccatgagaagaacaatgggcatgtgcttggggaagtgagaaagg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtctggctacagcataccatgagaagaacaatgggcatgtgcttggggaagtgagaaagg 508

                                                                       
Query: 437 agctgtgatggggatgcatatcccactgtacacatgatagctttaaaaggagaagctgca 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agctgtgatggggatgcatatcccactgtacacatgatagctttaaaaggagaagctgca 448

                                          
Query: 497 tgacccagggaatacgattaaagatgtttgg 527
           ||||||||||||||| |||||||||||||||
Sbjct: 447 tgacccagggaatacaattaaagatgtttgg 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)