Query= MSMg01no198_c22.b1 MSMg01no198_c22.b1 CHROMAT_FILE:
MSMg01no198_c22.b1 PHD_FILE: MSMg01no198_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:20 2005
(316 letters)
>mm_chr1_59843248_59843965
Length = 718
Score = 584 bits (302), Expect = e-171
Identities = 309/312 (99%), Gaps = 2/312 (0%)
Strand = Plus / Minus
Query: 5 gaattcatctgggctcataacatctccactacaaggataatgcttttgtggagaagggct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcatctgggctcataacatctccactacaaggataatgcttttgtggagaagggct 457
Query: 65 aatttcccaacataagtttcttctgataggaagagtatgcagtgatacatcttggtttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aatttcccaacataagtttcttctgataggaagagtatgcagtgatacatcttggtttaa 397
Query: 125 gctttgcaaacacttaacaagaaagaatcaatgagatataaggaatctcattaactctga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gctttgcaaacacttaacaagaaagaatcaatgagatataaggaatctcattaactctga 337
Query: 185 acagttttctcttc--tgaggactcatgtctcagcccattctacattcagccccggcgcc 242
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acagttttctcttctatgaggactcatgtctcagcccattctacattcagccccggcgcc 277
Query: 243 atgcctggcttagctgtgccccactccaccccatatgtggcttaccctcagcccagtccc 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 276 atgcctggcttagctgtgccccactccaccccacatgtggcttaccctcagcccagtccc 217
Query: 303 tagccacttccc 314
||||||||||||
Sbjct: 216 tagccacttccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 718
Length adjustment: 9
Effective length of query: 307
Effective length of database: 709
Effective search space: 217663
Effective search space used: 217663
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_c22.g1 MSMg01no198_c22.g1 CHROMAT_FILE:
MSMg01no198_c22.g1 PHD_FILE: MSMg01no198_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:20 2005
(294 letters)
>mm_chr1_59699123_59699816
Length = 694
Score = 553 bits (286), Expect = e-162
Identities = 292/294 (99%)
Strand = Plus / Plus
Query: 1 attggaactccctaaaagaaggaaaaagaaagtttgtataaaaatcttaggttattagta 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggaactccctaaaaaaaggaaaaagaaagtttgtataaaaatcttaggttattagta 260
Query: 61 actatgataaaaccataaaagaaaaagaaacagcaggaaacatgaaaggcttaaggaaat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 actatgataaaaccataaaagaaaaagaaacagcaggaaacatgaaaggctttaggaaat 320
Query: 121 ctcatgttccaagtgctactttatagacagtcatgatgttctttgcagagatactgaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcatgttccaagtgctactttatagacagtcatgatgttctttgcagagatactgaagg 380
Query: 181 ttggttatctccacatcttcattttacaactagggaacgtgaggcctgaagataagctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggttatctccacatcttcattttacaactagggaacgtgaggcctgaagataagctaa 440
Query: 241 gaatttcagctcaaaataattgataagcctattttctcaaccacctctgtgttc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatttcagctcaaaataattgataagcctattttctcaaccacctctgtgttc 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
