BAC Information

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BAC

Clone NameMSMg01-198E17
Chromosome1 (Build37)
Map Location 134,315,134 - 134,315,782
singlet/doubletsinglet
Overlap geneRipk5
Upstream geneSrgap2, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2
Downstream geneRbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198E17.T7 (MSMg01no198_e17.b1)MSMg01-198E17.TJ (MSMg01no198_e17.g1)
ACCAG385688AG385689
length853737
length of high quality
(start - end)
---649 (73 - 721)
definitionCHROMAT_FILE: MSMg01no198_e17.b1 PHD_FILE: MSMg01no198_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:28 2005CHROMAT_FILE: MSMg01no198_e17.g1 PHD_FILE: MSMg01no198_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTCACTTCNTTCTTTTTTTTTGTTCTCTATCCTATTGTTTTAAAAG
CACAATAAATCAAGACACACACCCCTACATTATAAATATATTACTACAAT
ACTCNTGTTCTCNCTATTGTATTATATATCTGTATTTATTCTCTTCTCTC
CATATCATCTATAAACTTATCCCCATACATTAAAACTATCNAATATNNCC
CTNNNNNNNNNNNAAAGAGGAGACTCCACTTTAACAATTTGGNNNNNAAA
AAANNNNNNNAGCTGCCCTTATATANNNAGNNNNNGGGGGGNNNNNGGGG
TATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAT
CCCGCGGAAATCAGCTCCCAAGGCCAGAAATTAGTGTTGCACTCCTTAAA
CCACTGTAGCCAACCTATCCCTGTCCAGGAAACTCCTCCTTTAGGAAAAC
CTGTCTTTAAAACCCAAAACATAAGGGGCCCTGGGCCCTTTTATCCCCAC
CCTCTGGTGAAAAAAAAAAAGACCAGGGGGAAACCCTCTGGGAAATCTAG
GGAAGAGCCCCCGGGTTTTAAACCGGGGTTTAACAAAAAAAACCCCTGCC
TGAAAAAAAAGGAAAACAAACAAACCCCCGGCCCTATTTTTCAATGGGGG
AAAGGCGGTTTAATAGAACCAACCCCCGGGGCCTCAAAATATGTGTTTAT
AGGGGCGGCACCCCCCCAGAAAGGGGTTAACGCCCAATTTTTTTTTTTTT
TTTTTTCCCCCCCCCCCCCCCCCCCCCCCACAATAAAGTTATTCTCTTAT
TCACCCCCCCCCCTTTTTCTTTATTATTCCCGCCCCCCCACCAAAAAAAA
AAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXGGTGGGGAACTAGAGGGTTTAACTTTTA
CCACCTTCTCCTTAGGAAGTTGATGAGAGAAGCCACTGACTTTCCATGTG
GGTAGGTAGACAGGGCACAACCTAACAGCAGGTATGTCCTTGGTTTGCCT
TTAGTGATTCTCGAGCTGCAGTGTAGATTAAAATAACCTCAGGAGTGTAT
TAAAAATGCCATGTCCCAGGTTGTGTCTTATGGATTCTGGCTGTGTAACC
ATGGTGGGGGGGTCCTAAGAGTCTAATTTAGCAAGTCAAAGATATTGGAA
TCTGATACAGGTGTTTTATTATCACTTACCGCGAACTTGTGAGTTGGACC
CTATACTCTTTGTTGCATGTTTAAGAACGTTGTCTGAGACTACAGAAGGG
GGTGTTTAAAGACATGCTGGTAAGTCCTGATAGGGCCCTCAATGGTACTG
TTCTATTGCCCAGGATAGCAATTTAAAGAGCCCTTGTTTTGGGTCAGCAT
GATAGCTTAGCTGGTACATGTACCTGCTGCCAATCCTGATGCCCTGAGTT
GAGCAGGAGAGAACCTACTCTTGAAAGTAGTCTGCTGACCTCCACATATA
GGCCACTGTGCATACACACATGTGTGTGCACTCGCGCACACACACACACA
CACACACACAGAGTATAGGTATTTTTTAAAAAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_e17.g1 MSMg01no198_e17.g1 CHROMAT_FILE:
MSMg01no198_e17.g1 PHD_FILE: MSMg01no198_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:28 2005
         (649 letters)



>mm_chr1_134314934_134315982
          Length = 1049

 Score = 1201 bits (621), Expect = 0.0
 Identities = 642/649 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtggggaactagagggtttaacttttaccaccttctccttaggaagttgatgagagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtggggaactagagggtttaacttttaccaccttctccttaggaagttgatgagagaag 260

                                                                       
Query: 61  ccactgactttccatgtgggtaggtagacagggcacaacctaacagcaggtatgtccttg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ccactgactttccatgtgggtaggtagacggggcacaacctaacagcaggtatgtccttg 320

                                                                       
Query: 121 gtttgcctttagtgattctcgagctgcagtgtagattaaaataacctcaggagtgtatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgcctttagtgattctcgagctgcagtgtagattaaaataacctcaggagtgtatta 380

                                                                       
Query: 181 aaaatgccatgtcccaggttgtgtcttatggattctggctgtgtaaccatggtggggggg 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgccatgtctcaggttgtgtcttatggattctggctgtgtaaccatggtggggggg 440

                                                                       
Query: 241 tcctaagagtctaatttagcaagtcaaagatattggaatctgatacaggtgttttattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctaagagtctaatttagcaagtcaaagatattggaatctgatacaggtgttttattat 500

                                                                       
Query: 301 cacttaccgcgaacttgtgagttggaccctatactctttgttgcatgtttaagaacgttg 360
           ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttaaggtgaacttgtgagttggaccctatactctttgttgcatgtttaagaacgttg 560

                                                                       
Query: 361 tctgagactacagaagggggtgtttaaagacatgctggtaagtcctgatagggccctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgagactacagaagggggtgtttaaagacatgctggtaagtcctgatagggccctcaa 620

                                                                       
Query: 421 tggtactgttctattgcccaggatagcaatttaaagagcccttgttttgggtcagcatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtactgttctattgcccaggatagcaatttaaagagcccttgttttgggtcagcatga 680

                                                                       
Query: 481 tagcttagctggtacatgtacctgctgccaatcctgatgccctgagttgagcaggagaga 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 tagcttagctggtacatgtacctgctgccaatcctgatgccctgagttgaccaggagaga 740

                                                                       
Query: 541 acctactcttgaaagtagtctgctgacctccacatataggccactgtgcatacacacatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acctactcttgaaagtagtctgctgacctccacatataggccactgtgcatacacacatg 800

                                                            
Query: 601 tgtgtgcactcgcgcacacacacacacacacacacacagagtataggta 649
           ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtgtgcactcgcacacacacacacacacacacacacagagtataggta 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)