BAC Information

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BAC

Clone NameMSMg01-198H24
Chromosome1 (Build37)
Map Location 147,674,717 - 147,675,031
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198H24.T7 (MSMg01no198_h24.b1)MSMg01-198H24.TJ (MSMg01no198_h24.g1)
ACCAG385802AG385803
length743761
length of high quality
(start - end)		319 (46 - 364)---
definitionCHROMAT_FILE: MSMg01no198_h24.b1 PHD_FILE: MSMg01no198_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:45 2005CHROMAT_FILE: MSMg01no198_h24.g1 PHD_FILE: MSMg01no198_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTATCCTTATGCCTGTATGATAACACACACTGTGATTTCAGAG
AGTATGCAGTTTGAAGGCCAATAGTGAAGTAGAAAAGTGGTCCTGTCTCT
GGAACTAGATATACCATGAACCGGTCTGTATCATAAGGTGTGATTTCTAC
CTAACTGGTGGCAAACAGAGTTTAAATATAAATGGTGTACTATTCCAATG
TGAATTTTCAAAACATTCTGTAAATTTTGTAAGATCTGAATAAATTTTCA
AATGAATAAAACTTTTAGCATAAGAAACATAGCATTATATTACTTAATAC
AATGAAGTGATAGGACTCTAGACAGATATTACTGTCACTCATCATTGGCA
TGTATAATGTACTTATTTATTGAAAATAGATCCTTTCTGTGTGTGTATTA
TACATACATGTCAAGGAAGATCATTGTAGCCTTTGATCCATTACATTATC
TACTTCTTTGCAATTTCTCTGACTGATCAAAAGGAATAAACAAGTAATAC
ATTCTTAATAATACACAGAGTAATTCATAGTCCATTGTAAAAGCAGACCA
GGCATAATAATAATTTTTATGAATATAATCAGAGCTCATGCTTACAAATA
TCTACTTCTTATCTTCTCATAAATAATGTCAACAGAAATATGTTCTCCAG
AGGAATTATATATACTTTGTGGAAATTTAAACTATAAAATAAN

TCAATGACAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGGTGCCTAAATAAACATGAAT
TTTTGGTTATTTAGTATTTATATTTGATTGTCGTGTGTGTATGTGTGTGT
GCCCACGCNCCCACCCCCNCCCCCCCCCCTACACCCGCCCCCCCCACCCC
CCCCACACCCCCCCTAAAACCCCCCAACCCACGTACCTCCAATTACCCCC
CCCCACCCGCCAACACACCACCCAACCCCCCCCCCCTCAAATACCCCTAC
ACATACCCACCAACCCCCCCCCCCGTTCTTTTTCAACCCAACCCCCCCCC
TCGCGAAAAAAAATCTTAATACCCCCAAAACANAAAGCCCAGGAAAATAA
GAAAATGAAAAAAAAAGTGTCCGCCCCCCCCCAAAAAAAAAAAACAAGTT
CCCGCGCCCCCCCCCCCCCCCCCCTACTCCCACCCCCCCCCCCACACCCT
CCCCCCCCTTCCCCCCCCCCCCCCCACCCCCCCCCACCCCCCCACCCCCC
ACCCCCCTCCCTCACCCCACCCACCCCCCCCACCACCCCCCCTCCCCCCC
CCACCCCCACCACCCAACCCCCCCCACCCAACCAACCCCCCACCCCCCCA
ACAACACCCCCCACCCATCCCCCCCCCACCCAACCCCCCCCCCACCCCCC
CCCCACCCCCCCCCCCCACCCCTCCCCGCAACCCCCCCCCCCCTCGCCCC
ACCCCCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_h24.b1 MSMg01no198_h24.b1 CHROMAT_FILE:
MSMg01no198_h24.b1 PHD_FILE: MSMg01no198_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:45 2005
         (319 letters)



>mm_chr1_147674513_147675231
          Length = 719

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttatccttatgcctgtatgataacacacactgtgatttcagagagtatgcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcacttatccttatgcctgtatgataacacacactgtgatttcagagagtatgcag 460

                                                                       
Query: 65  tttgaaggccaatagtgaagtagaaaagtggtcctgtctctggaactagatataccatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttgaaggccaatagtgaagtagaaaagtggtcctgtctctggaactagatataccatga 400

                                                                       
Query: 125 accggtctgtatcataaggtgtgatttctacctaactggtggcaaacagagtttaaatat 184
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 399 actggtctgtatcataaggtgtgatttctacctaactggtggcaaacagtgtttagatat 340

                                                                       
Query: 185 aaatggtgtactattccaatgtgaattttcaaaacattctgtaaattttgtaagatctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaatggtgtactattccaatgtgaattttcaaaacattctgtaaattttgtaagatctga 280

                                                                       
Query: 245 ataaattttcaaatgaataaaacttttagcataagaaacatagcattatattacttaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ataaattttcaaatgaataaaacttttagcataagaaacatagcattatattacttaata 220

                          
Query: 305 caatgaagtgatagg 319
           |||||||||||||||
Sbjct: 219 caatgaagtgatagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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