Query= MSMg01no199_a19.b1 MSMg01no199_a19.b1 CHROMAT_FILE:
MSMg01no199_a19.b1 PHD_FILE: MSMg01no199_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:29 2005
(612 letters)
>mm_chr1_112915852_112916861
Length = 1010
Score = 1110 bits (574), Expect = 0.0
Identities = 598/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Minus
Query: 5 gaattcatctttccagcagtacccaataagacactgatgtattctttgtaaagctttatg 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaattcatcttttcagcagtacccaataagacactgatgtattctttgtaaagctttatg 749
Query: 65 taatgtcaaaaagaacaccataatagttgctgagaaaactgtacgttttgtccttccaag 124
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 taatgtcaaaaagaagaacataatagttgctgagaaaactgtacgttttgtccttccaag 689
Query: 125 gactagaataaaaaaaaaatctaacagctttttaaacttttaatcatcttaatttttagc 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaatagaataaaaaaaaaatctaacagctttttaaacttttaatcatcttaatttttagc 629
Query: 185 aatattcataatggtttgtgttaataacaaaaggaaatttgaattttgtagttcttattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatattcataatggtttgtgttaataacaaaaggaaatttgaattttgtagttcttattc 569
Query: 245 ttcatgcttaacttgcatagtctagacttttctgaaagtcttaaaaaggaattgttcagg 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 568 ttcatgcttaacttgcatagtctagacttttctcaaagtcttaaaaaggaattgttcagg 509
Query: 305 taaggttgaactatgcatgcttgtgaacaattgttataattattgatgtgagaagatcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taaggttgaactatgcatgcttgtgaacaattgttataattattgatgtgagaagatcca 449
Query: 365 attcattttgtgtagcatcattctttggctttaacactttactctaagaatagagtgagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 attcattttgtgtagcatcattctttggctttaacactttactctaagaatagagtgagc 389
Query: 425 cttaagcaagcatatacacatttcatctttcaaatgtctggctatgtctgcttcaagatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttaagcaagcatatacacatttcatctttcaaatgtctggctatgtctgcttcaagatc 329
Query: 485 ctgccttgactttacccctgtgatgaactctgttagttggaaggctgctcatttccagac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgccttgactttacccctgtgatgaactctgttagttggaaggctgctcatttccagac 269
Query: 545 agatcaatcccaggtgagcataatcccatgagaataaggtggtgttttttttgttngttg 604
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 268 agatcaatgccaggtgagcataatcccatgagaataaggtggtg-tttttttgtt-gttg 211
Query: 605 ttgttg 610
||||||
Sbjct: 210 ttgttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1010
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1000
Effective search space: 602000
Effective search space used: 602000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_a19.g1 MSMg01no199_a19.g1 CHROMAT_FILE:
MSMg01no199_a19.g1 PHD_FILE: MSMg01no199_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:29 2005
(676 letters)
>mm_chr1_112886998_112888073
Length = 1076
Score = 1247 bits (645), Expect = 0.0
Identities = 670/681 (98%), Gaps = 6/681 (0%)
Strand = Plus / Plus
Query: 1 tctcttcctccttcctcactccatccccaggactcctgaaagtcctgcttctgtctctcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttcctcctttctcactccatccccaggactcctgaaagtcctgcttctgtctctcc 260
Query: 61 atccagtcattggttgccagtaactatgctgaccagtcaaagaacatctcaggactggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccagtcattggttgccagtaactatgctgaccagtcaaagaacatctcaggactggtt 320
Query: 121 tcctttagtcctcagtgcaggacacttcaaacagattttggggtaatagaataagcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tcctttagtcctcagtgcaggacacttcaaacagattttggggtaatagaatatgcaaga 380
Query: 181 gaacataagccactgtgtctacctactcctcaaggtttatgtaactcttgttcacccccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacataagccactgtgtctacctactcctcaaggtttatgtaactcttgttcacccccc 440
Query: 241 aactcccaataaagagaactgttccactgaaactgtaaccaggggcaattacttctcctg 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aactcccaataaagagaactgttccactgaaactgtaaccaggggcatttacttctcctg 500
Query: 301 aactcatgtcaacagagatcctgctaaaatatccatctacctattaaagtttcatttctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactcatgtcaacagagatcctgctaaaatatccatctacctattaaagtttcatttctt 560
Query: 361 ctagtccagttgaggatacaagggtgcctggataccctgagaggaaaacagtatgtacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagtccagttgaggatacaagggtgcctggataccctgagaggaaaacagtatgtacca 620
Query: 421 acagaaaacagcaaacaaacaaataaccaaccaaacaaaacaacatagtatacatctttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaaaacagcaaacaaacaaataaccaaccaaacaaaacaacatagtatacatctttc 680
Query: 481 cttggtttacttgatcaaaaaaacaaaaacaaaataaaaacaaaatagaaaacaaacaaa 540
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 cttggtttaattgatcaaaaaaacaaaaacaaaataaaaacaaaatacaaaacaaacaaa 740
Query: 541 aaatataccaaacaaaaacaaataaaaaaaacaagacaaaacagaacaa-----aaaaaa 595
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 741 aaatataccaaacaaaaacaaataaaaaaa-caagacaaaacagaacaacaacaaaaaaa 799
Query: 596 aaaacaaatacaatctaattgaaacatgacagtaatactgaattgctgcaacctcaatct 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaaacaaatacaatctaattgaaacatgacagtaatactgaattgctgcaacctcaatct 859
Query: 656 aaagaaaacaatggctagaaa 676
|||||||||||||||||||||
Sbjct: 860 aaagaaaacaatggctagaaa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
