BAC Information

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BAC

Clone NameMSMg01-202F13
Chromosome1 (Build37)
Map Location 61,324,718 - 61,325,355
singlet/doubletsinglet
Overlap genenone
Upstream geneNbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream genePard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202F13.T7 (MSMg01no202_f13.b1)MSMg01-202F13.TJ (MSMg01no202_f13.g1)
ACCAG387538AG387539
length729732
length of high quality
(start - end)
89 (109 - 197)638 (77 - 714)
definitionCHROMAT_FILE: MSMg01no202_f13.b1 PHD_FILE: MSMg01no202_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:07 2005CHROMAT_FILE: MSMg01no202_f13.g1 PHD_FILE: MSMg01no202_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATTTCGGGAGCGAGGCGNGGAANNCCATATTATCTTCAGGCGGGAG
CTAGGNACTATGGATAAAGCNCTATGTGAGGTAAAGGTTTTGTACGGACA
AGGGGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCACACACACACACACACACACACACACACACACACACAG
GCACAGTATCATCTTATCTCATTTTTTGTGAACAGGAATGAGTTGTCTGC
CAAGAGACAATACCTTCCTGATCGTGGGTGCGCCTTTGCGTGGTTAAGGA
GACCNCACCACAAAAGGACGCCCCATTTTTGTTTTTCGCCCGCCCCCCGC
CATAGCCCATGATTTTATCACCTAAATGAATATTTGGCGAGAAAAAAAAA
AAAAAAGGGAGGGGGGGGGGGTGGAGAGTGGAAAAGAGAACTTTGGCTGC
TGTGATCTGGGTCAACATTAACTTGAGCATCTTGTATAGACAGACTTACT
CAGCAGGACAGAAAGATGCTCAAAAGTCTCAGGAGAAACTTCACCCATAA
GCGTGAGTGTAGAAATATACGAAGATAAAGATATAAATACATGTGTCGCG
CGGTAAGCCGGGAGAGGGGGCGGTTTTTTTTTTTTTTTTGGAATCCAACC
CGATAAACCCAAATAAAGAACAAGATAAAAGGCCAGAAGATGTATATGGA
GAATTTATGGGCCATGTGTAGTCGTGTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCAAAACTTCATGAAACTAG
ACTTTGTTATTTCCTTCTTGGACTCTGTTCAGGTATGTGAAACTAATATG
AATTTGTCGTGCTATATCAGTGGTCTTGGAAAACCCATCAGCAATGCCTC
CGATTTCTCCTTTGGGAACATCCCTTCAACCTTAGAAACCAGGTCACAGT
GATTGACACATCTGCGTTCAGAAGCCTATAAGTTGGTCAAACTTCTCCGT
ATCCCTCAGAGGGTCCAATAACTGATTTAAAGAACTGTTGTTTCCATCTT
GAAATTCTTACATTTCTTTTTAAACAAGACACCTTGAATTTTTATTTTGT
ACTGAGCAGCACAAATTGTGTATCTTATCCTGGTGGTTGCTTTAGGATGC
AGTAACCAGCAGCAATGAAAGTCAATTCCAGAACTTTCTGAGAAGATTGA
TCTCATTGGAGTGGTAAGTTTAGAATGCCACTGGCAACCACACACAGCAT
GGGTCTCAGAAGAAAGCCCTAATGGGCAGAAGTAAGAGAAGAATAAAGAT
AATGCCTCCATTAAATCACCCAGATCTTTGAGTATAATATACTTTATTAT
TTTATATTTTTCCTAAGTTGCTTTTAGATAAGTGTTTCTGTATCTCAAAG
TCGAGTCTAATGTAATCATGGACCAGATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_f13.g1 MSMg01no202_f13.g1 CHROMAT_FILE:
MSMg01no202_f13.g1 PHD_FILE: MSMg01no202_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:08 2005
         (638 letters)



>mm_chr1_61324518_61325555
          Length = 1038

 Score = 1180 bits (610), Expect = 0.0
 Identities = 631/638 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgccaaaacttcatgaaactagactttgttatttccttcttggactctgttcaggtat 60
           |||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||
Sbjct: 201 catgccaaaacttcatgaaactagactttgttatttccctcatggagtctgttcaggtat 260

                                                                       
Query: 61  gtgaaactaatatgaatttgtcgtgctatatcagtggtcttggaaaacccatcagcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaaactaatatgaatttgtcgtgctatatcagtggtcttggaaaacccatcagcaatg 320

                                                                       
Query: 121 cctccgatttctcctttgggaacatcccttcaaccttagaaaccaggtcacagtgattga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccgatttctcctttgggagcatcccttcaaccttagaaaccaggtcacagtgattga 380

                                                                       
Query: 181 cacatctgcgttcagaagcctataagttggtcaaacttctccgtatccctcagagggtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatctgcgttcagaagcctataagttggtcaaacttctccgtatccctcagagggtcc 440

                                                                       
Query: 241 aataactgatttaaagaactgttgtttccatcttgaaattcttacatttctttttaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataactgatttaaagaactgttgtttccatcttgaaattcttacatttctttttaaaca 500

                                                                       
Query: 301 agacaccttgaatttttattttgtactgagcagcacaaattgtgtatcttatcctggtgg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 agacaccttgaatttttattttgtactgagcagcacaaattgtgtatcttgtcctggtgg 560

                                                                       
Query: 361 ttgctttaggatgcagtaaccagcagcaatgaaagtcaattccagaactttctgagaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgctttaggatgcagtaaccagcagcaatgaaagtcaattccagaactttctgagaaga 620

                                                                       
Query: 421 ttgatctcattggagtggtaagtttagaatgccactggcaaccacacacagcatgggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgatctcattggagtggtaagtttagaatgccactggcaaccacacacagcatgggtct 680

                                                                       
Query: 481 cagaagaaagccctaatgggcagaagtaagagaagaataaagataatgcctccattaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaagaaagccctaatgggcagaagtaagagaagaataaagataatgcctccattaaat 740

                                                                       
Query: 541 cacccagatctttgagtataatatactttattattttatatttttcctaagttgctttta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacccagatctttgagtataatatactttattattttatatttttcctaagttgctttta 800

                                                 
Query: 601 gataagtgtttctgtatctcaaagtcgagtctaatgta 638
           ||| ||||||||||| ||||||||||||||||||||||
Sbjct: 801 gatgagtgtttctgtgtctcaaagtcgagtctaatgta 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)