BAC Information

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BAC

Clone NameMSMg01-202M19
Chromosome1 (Build37)
Map Location 7,130,379 - 7,130,726
singlet/doubletsinglet
Overlap genePcmtd1
Upstream gene4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18, LOC665015, LOC665027, LOC100039347, LOC435608
Downstream geneLOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202M19.T7 (MSMg01no202_m19.b1)MSMg01-202M19.TJ (MSMg01no202_m19.g1)
ACCAG387812AG387813
length718727
length of high quality
(start - end)
668 (46 - 713)350 (376 - 725)
definitionCHROMAT_FILE: MSMg01no202_m19.b1 PHD_FILE: MSMg01no202_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:45 2005CHROMAT_FILE: MSMg01no202_m19.g1 PHD_FILE: MSMg01no202_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCACTGTGCCAGATCTTAGGATGAGTGGAATGCAACATCTGTTC
CAAAACAATTGTGAATGGGCCCTGAGACCGCAGGAGCAAGGACACAGGAG
CCCTGCCTGATCAGTGGCTCGGGTTCCTTCTGGTCAGTGCTGATATACCT
TGGTATCAAACACAGCAGACCGCCATACGGTCGCCAGAGGAGATACCACT
TCTAGGTGCGTACGTGCTCAGGATCTTAGGATTCTGGGATCCTAGGATCC
CAGGAGCTTGGTCAAACCAGGATCCCAGGATCTCAGAGGAAGCAATCCCA
TTAAAATTGTTGACTAGACAAGGCTGCCCACTCTCTCCCTACCTATTCAA
TATAGTAATTGAAGTCCTAGCCAGAGCAATTGGACAACAAAAGGAGATCA
AAGGAATACAAATTGAAAAGGAAGAAGTCAAAATATCACACTATTTGCAG
ATGATATGAAAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTC
CTAAACCTGATAAACAACTTTAGTGCAGTATGGACTCTAACTAAGGAAGT
GAAAGATCTGTATGATAAGAACTTCAGATCTCTGAAGAAAGAAATCAATG
AAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGAATC
AATATAGTGAAAATGGCT
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGTCCAAAAGAAATCGGAGAGTACTCACAGTCTTTATCCTT
ACAAATGTGGTCACTTACTACCTCTTCAGGATACATAGGAAATTACCCTG
TCCTTATCTCAATCCTTCCCTCAATTCTTTTCCATACAATACAAAAATTT
CACTATATTCTCTTCGTCCCATGTTCCCTTTCTTGGTGAAAGTCCAGTTT
CCTTCTGAACTATGCAAGGTAAAGACTTGAATACCAGCCTTTTTAGTCTC
CTGCTGTGGAGAAGGCTACAGACTCATTTCCAGAGTTCAAATCCTCAACA
TATCATATTTTTTGCTTTGACACCGCTTTCCTTTTTCTTCTTGCATTTAA
TCCAACGATCATCCCACTTCCACTGAAATGTAAAACCCTGAGGATACCTT
GATTCTTTAAAAATAATATTTATGTGATCTAATAGGGATGAAAGTAGGCC
TGAAACAAGAAGAAAGGTTGTCTTACAGATAGAAAGTAAGTATGTAATCA
GTCTGAAGATTTTTCTATTAAATTTGTTTTTAATCTAGTATATTTATTTG
TAAGATTTACTAATTGCCTGATAGTAGCTTTGATATAAATTTGCAATTTC
TTTCCTTTATTATGCTTCTATGAAGTATTTGCATTAGACCCTATATCAGC
TGCTGAAAATACCTAATAGAGAATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_m19.g1 MSMg01no202_m19.g1 CHROMAT_FILE:
MSMg01no202_m19.g1 PHD_FILE: MSMg01no202_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:45 2005
         (350 letters)



>mm_chr1_7130179_7130926
          Length = 748

 Score =  646 bits (334), Expect = 0.0
 Identities = 346/350 (98%), Gaps = 2/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcctttttcttcttgcatttaatccaacgatcatcccacttccactgaaatgtaaaa 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 201 ctttcctttttcttcttgcatttaatccaacgaccatcccacttccactgtaatgtaaaa 260

                                                                       
Query: 61  ccctgaggataccttgattctttaaaaataatatttatgtgatctaatagggatgaaagt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ccctgaggatacct-gattctttaaaaataatatttatgtgatctaataggga-gaaagt 318

                                                                       
Query: 121 aggcctgaaacaagaagaaaggttgtcttacagatagaaagtaagtatgtaatcagtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggcctgaaacaagaagaaaggttgtcttacagatagaaagtaagtatgtaatcagtctg 378

                                                                       
Query: 181 aagatttttctattaaatttgtttttaatctagtatatttatttgtaagatttactaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagatttttctattaaatttgtttttaatctagtatatttatttgtaagatttactaatt 438

                                                                       
Query: 241 gcctgatagtagctttgatataaatttgcaatttctttcctttattatgcttctatgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcctgatagtagctttgatataaatttgcaatttctttcctttattatgcttctatgaag 498

                                                             
Query: 301 tatttgcattagaccctatatcagctgctgaaaatacctaatagagaata 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatttgcattagaccctatatcagctgctgaaaatacctaatagagaata 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 748
Length adjustment: 9
Effective length of query: 341
Effective length of database: 739
Effective search space:   251999
Effective search space used:   251999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)