BAC Information

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BAC

Clone NameMSMg01-204B10
Chromosome1 (Build37)
Map Location 129,736,713 - 129,842,600
singlet/doubletdoublet
Overlap geneYsk4, Rab3gap1
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2
Downstream geneZranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204B10.T7 (MSMg01no204_b10.b1)MSMg01-204B10.TJ (MSMg01no204_b10.g1)
ACCAG388606AG388607
length711716
length of high quality
(start - end)		571 (46 - 616)624 (77 - 700)
definitionCHROMAT_FILE: MSMg01no204_b10.b1 PHD_FILE: MSMg01no204_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:30 2005CHROMAT_FILE: MSMg01no204_b10.g1 PHD_FILE: MSMg01no204_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,842,033 - 129,842,600)(129,736,713 - 129,737,336)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTATACCAGGGCCAGGCTGACCTCAAACTGCCTGCTTCTG
CCTCTGGGATGCACTGGTCTGCAGTAGTAAGTGGCCACTGCATTGAGATC
TGGACATCCCAACATCCTGCCTTTGTACTGATGCTGTTGGAGAGACGCAG
CTGTGGACAGCTAGCATCCCACTTTTGGGTGTCAGCCAGGTTCCCTGGGT
AGACATCTGCCTCTGAGCACAATTTTGTTAGCCAAATGACAAATGATCAT
TTTTCATAGATGTCACAGTGCCTACAAGTGACTAGAGCTGACCCTGCTCT
GGATCTATCCAGGCCCTTCTAGGTTCAGGATTTAACTGATAACATAGGAC
AAACGATTGTTGCTTACCCCTCTCCCCTGGAGTAACAGGTATAAAGACAG
ACATGAAGTACATGGACCGGGTGGGTCCCAGCCCAACCTCTAAGCCTTCA
GGTCAGCTTAGCTACAGCCAGAGAGAGGCCCATCCTCTCCCACTGTCAGA
GAGTGGGAAATTCACACTCTAAAAATATTTCCATGTCTCATGTAGGCAAG
ATATTGCAGGAAAGTGCCAGTGGGCTACTATGAATACAGTTCCTTCCTTA
CAGAACTCTGGCAAAAGCTAAGCCTTTTTTTTTAGCCAAAATTAGTGTTC
CAGAAGGTTAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGATACAGAGGTGAGATTCAG
TCTCAAACAGACAGATGAACAGAGCTATAAAACAGATGTAAAAACAGAAA
GAAAGACTTCAAACAGAACTTTCAAACTGGGGAATCTGCATCCAGAGAGA
AATACTGACCTGGTCTGGGCATAGAATCCATCAGGATATCCAGTAACTGC
TGCTTCCTCCAACTCTCAATTTGTGACACATAATGTATTGCTGACTTGCC
ACTGAAATCACAAAGCTTAGGATCTCTGGGAAGAACAGAAGAAGCATCAA
AGATTATTGATCCAATTTGGCTAAGATTGGCTAAATCTGTTAAGACATAA
GGACACTGACATCAAATAAACACAAAGCTTCTTAAGTTGGGTAGATAATA
ATTATTTCAAAACACACCCAAGAGAATGACCATTTCTCAAAACTTTAAGC
AAAAGGCCTCGTAACATATCTCAACTGGTAGAGTGCTTGCCTAATATGCA
CAAAGCCATGTGTTCCATCCTTAATGTTGAATATGCCAGGTATGAACTAG
GCTGGCCATTCTAGGCTGGCCTGAAACTCAGCTGAACATGGCTTTGAACT
TCGATAATGCCTTTACCTCCCACATACTTAAGTAACAGATACATAGGCCA
CATATGTCTGATGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_b10.b1 MSMg01no204_b10.b1 CHROMAT_FILE:
MSMg01no204_b10.b1 PHD_FILE: MSMg01no204_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:30 2005
         (571 letters)



>mm_chr1_129841766_129842736
          Length = 971

 Score = 1060 bits (548), Expect = 0.0
 Identities = 563/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtataccagggccaggctgacctcaaactgcctgcttctgcctctggg 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ggaattcactctgtagaccagggccaggctgacctcaaactgcctgcttctgcctctggg 776

                                                                       
Query: 64  atgcactggtctgcagtagtaagtggccactgcattgagatctggacatcccaacatcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 atgcactggtctgcagtagtaagtggccactgcattgagatctggacatcccaacatcct 716

                                                                       
Query: 124 gcctttgtactgatgctgttggagagacgcagctgtggacagctagcatcccacttttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gcctttgtactgatgctgttggagagacgcagctgtggacagctagcatcccacttttgg 656

                                                                       
Query: 184 gtgtcagccaggttccctgggtagacatctgcctctgagcacaattttgttagccaaatg 243
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 655 gtgtcagccaggttccctgggtagatatctgcctctgagcacaattttgttagccaaatg 596

                                                                       
Query: 244 acaaatgatcatttttcatagatgtcacagtgcctacaagtgactagagctgaccctgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acaaatgatcatttttcatagatgtcacagtgcctacaagtgactagagctgaccctgct 536

                                                                       
Query: 304 ctggatctatccaggcccttctaggttcaggatttaactgataacataggacaaacgatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctggatctatccaggcccttctaggttcaggatttaactgataacataggacaaacgatt 476

                                                                       
Query: 364 gttgcttacccctctcccctggagtaacaggtataaagacagacatgaagtacatggacc 423
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gttgcttacagttctcccctggagtaacaggtataaagacagacatgaagtacatggacc 416

                                                                       
Query: 424 gggtgggtcccagcccaacctctaagccttcaggtcagcttagctacagccagagagagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gggtgggtcccagcccaacctctaagccttcaggtcagcttagctacagccagagagagg 356

                                                                       
Query: 484 cccatcctctcccactgtcagagagtgggaaattcacactctaaaaatatttccatgtct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cccatcctctcccactgtcagagagtgggaaattcacactctaaaaatatttccatgtct 296

                                       
Query: 544 catgtaggcaagatattgcaggaaagtg 571
           ||||||||||||||||||||||||||||
Sbjct: 295 catgtaggcaagatattgcaggaaagtg 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_b10.g1 MSMg01no204_b10.g1 CHROMAT_FILE:
MSMg01no204_b10.g1 PHD_FILE: MSMg01no204_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:30 2005
         (624 letters)



>mm_chr1_129736513_129737536
          Length = 1024

 Score = 1137 bits (588), Expect = 0.0
 Identities = 615/624 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggatacagaggtgagattcagtctcaaacagacagatgaacagagctataaaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggatacagaggtgagattcagtctcaaacagacagatgaacagagctataaaacaga 260

                                                                       
Query: 61  tgtaaaaacagaaagaaagacttcaaacagaactttcaaactggggaatctgcatccaga 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtaaaaacagaaagaaagacttcaaacagaactttcaaactggggaatctgcatccaga 320

                                                                       
Query: 121 gagaaatactgacctggtctgggcatagaatccatcaggatatccagtaactgctgcttc 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gagaaatactgacctggtctgggcatagaatccatcaggatgtccagtaactgctgcttc 380

                                                                       
Query: 181 ctccaactctcaatttgtgacacataatgtattgctgacttgccactgaaatcacaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccaactctcaatttgtgacacataatgtattgctgacttgccactgaaatcacaaagc 440

                                                                       
Query: 241 ttaggatctctgggaagaacagaagaagcatcaaagattattgatccaatttggctaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggatctctgggaagaacagaagaagcatcaaagattattgatccaatttggctaaga 500

                                                                       
Query: 301 ttggctaaatctgttaagacataaggacactgacatcaaataaacacaaagcttcttaag 360
           ||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 501 ttggctaaatctgttaagacataagaacactgacatcaaataaacagaaagtttcttaag 560

                                                                       
Query: 361 ttgggtagataataattatttcaaaacacacccaagagaatgaccatttctcaaaacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggtagataataattatttcaaaacacacccaagagaatgaccatttctcaaaacttt 620

                                                                       
Query: 421 aagcaaaaggcctcgtaacatatctcaactggtagagtgcttgcctaatatgcacaaagc 480
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaagaggcctcgtgacatatctcaactggtagagtgcttgcctaatatgcacaaagc 680

                                                                       
Query: 481 catgtgttccatccttaatgttgaatatgccaggtatgaactaggctggccattctaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgtgttccatccttaatgttgaatatgccaggtatgaactaggctggccattctaggc 740

                                                                       
Query: 541 tggcctgaaactcagctgaacatggctttgaacttcgataatgcctttacctcccacata 600
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 741 tggcctgaaactcagctgaacatggctttgaacttcgatcctgcctttacctcccacata 800

                                   
Query: 601 cttaagtaacagatacataggcca 624
           ||||||||||||||||||||||||
Sbjct: 801 cttaagtaacagatacataggcca 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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