CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGG
AATTCCAAACTGTTTCTCACTGACAAAGTCACACCCCTGTTAGAACACAA
GATAAATCATTGTCAGCTGCTATGCACAATCTGAAGCAGCCCATATCCCA
CCCCTGGGACATAACAAAAACATACTCTTAGAATAGTTCTGTGTTTCTTA
AAGAAACCAAAGTTCTCACTATATGTAACAAATGCCTACTGCCTAAAATC
TTTCAGGGGATTTTAGATCTAGTTCCTTCTTAACTGTTAAGTTTGCTTTT
CAGCTGCATAGTCAACACAGTGTTGACCGTACTTCTGCTTATTCTTAGGC
CTCACTTGGAAATTCACAGTGACTCTTCTTTTTAAATGAATGAATAAATA
AATAAATAAGAAATATCATCAATAGGAGTTTATATTCATAAGATATTTTC
CTTCTTGGTTGGTTTAACTACTAAGAAAAAGTCAGTCAAATTAAGATTTC
CTAGGCATGGGCTGGAGAGATGGCTCAGAGGTTAAGAGTACTGACTGCTC
TCACGTAGGTCCTGAGTTTGGTTCCCAGCAACCATATGGTGGCTCACAAC
CATCTGTAATGGGATCTGATGCACACTCTACTGGTGTGTGTCTAAAGATA
GCTACAGTGTACTCATATAAATAAATACATAAATAATATTTATATAAAAA
AGATTTCATAGGCACATAGTTTCCAACTCTT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACAGAAATATCTCACCTTTACCAGCCTTTGTTGTGC
AAACCTTGTTCCCTAGTGTATAACTCCTGGTTGAATTAAGATGCCTACCG
CCTATAGCTGGGCAGAAGAAAGGTAGGTGAAATTTCAGCTCCCAGGCTTG
CTGTTTGAGGTAGGACCGTGAGAGGGAGGAGGGAAAGAGGTGATGGGAGA
GAAGACACCAACGGGCAGGTGAATTATGAAAACATGGCCATGAGGGCTGG
AGTAAGAGCAGTCCAGGCAGAACATGGTTTGTTATAACTGGGCTATTGAT
AGGGAAGTAGATAAAATAGCACAGAAGGTCGATATCTGCCCAACTCCACT
GCTGTTAAGGTTCATTATAAATGTAAAGACTTTTATCTGGGAACTGAATG
ATCAAAGGAAGGGTAGAAACTCCCAATTAATATTAATTTTAAACCACAAC
AGAGCTATTTTTATTAGTGTTTATTTGATTATTTACTGAGTTATTAAAGA
ACTACTTATATATACACACTATTAAAAGTACCTGTACACACACACACACA
CACATTTATTTTTTGAGACAGGGTCTTCTGCAGCTTGGGCTGACCTTAGC
CTCCTTACTGAGCCAACACACTGGTGTATTTTAGCGCCTATTTGAGGACT
GGGACTTTTAGTTGTGCACCCCTTTAACATATTG

Query= MSMg01no204_b20.b1 MSMg01no204_b20.b1 CHROMAT_FILE:
MSMg01no204_b20.b1 PHD_FILE: MSMg01no204_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:32 2005
         (592 letters)



>mm_chr1_155050322_155051313
          Length = 992

 Score = 1102 bits (570), Expect = 0.0
 Identities = 588/596 (98%), Gaps = 4/596 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatctgaagcagcccatatcccacccctgggacataacaaaaacatactcttagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatctgaagcagcccatatcccacccctgggacataacaaaaacatactcttagaata 260

                                                                       
Query: 61  gttctgtgtttcttaaagaaaccaaagttctcactatatgtaacaaatgcctactgccta 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctgtgtttcttaaagaaagcaaagttctcactatatgtaacaaatgcctactgccta 320

                                                                       
Query: 121 aaatctttcaggggattttagatctagttccttcttaactgttaagtttgcttttcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatctttcaggggattttagatctagttccttcttaactgttaagtttgcttttcagct 380

                                                                       
Query: 181 gcatagtcaacacagtgttgaccgtacttctgcttattcttaggcctcacttggaaattc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatagtcaacacactgttgaccgtacttctgcttattcttaggcctcacttggaaattc 440

                                                                       
Query: 241 acagtgactcttctttttaaatgaatg----aataaataaataaataagaaatatcatca 296
           ||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 441 acagtgacttttctttttaaatgaatgaataaataaataaataaataagaaatatcatca 500

                                                                       
Query: 297 ataggagtttatattcataagatattttccttcttggttggtttaactactaagaaaaag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataggagtttatattcataagatattttccttcttggttggtttaactactaagaaaaag 560

                                                                       
Query: 357 tcagtcaaattaagatttcctaggcatgggctggagagatggctcagaggttaagagtac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tcagtcaaattaagatttcctaggcatgggctggagagatggctcagaggttaagagcac 620

                                                                       
Query: 417 tgactgctctcacgtaggtcctgagtttggttcccagcaaccatatggtggctcacaacc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgactgctctcacgtaggtcctgagtttggttcccagcaaccatatggtggctcacaacc 680

                                                                       
Query: 477 atctgtaatgggatctgatgcacactctactggtgtgtgtctaaagatagctacagtgta 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgtaatgggatctgatgcacactctactggtgtgtgtctaaagatagctacagtgta 740

                                                                   
Query: 537 ctcatataaataaatacataaataatatttatataaaaaagatttcataggcacat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcatataaataaatacataaataatatttatataaaaaagatttcataggcacat 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)