BAC Information

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BAC

Clone NameMSMg01-204G09
Chromosome1 (Build37)
Map Location 107,530,591 - 107,530,896
singlet/doubletsinglet
Overlap genePign
Upstream geneLOC100041134, Cdh20, Rnf152, LOC100041985, LOC666249
Downstream gene2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204G09.T7 (MSMg01no204_g09.b1)MSMg01-204G09.TJ (MSMg01no204_g09.g1)
ACCAG388792AG388793
length726723
length of high quality
(start - end)
315 (46 - 360)514 (77 - 590)
definitionCHROMAT_FILE: MSMg01no204_g09.b1 PHD_FILE: MSMg01no204_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:55 2005CHROMAT_FILE: MSMg01no204_g09.g1 PHD_FILE: MSMg01no204_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAGAAGTACAGAACAGAATGGAAATGTTACTACCCTTGACAAT
ATATAGTACAGTCAATAATTGGAAGGCAGAGGGGAGAGGAAACATATATG
TAGTGATCCTACTGAAGTCATAAACTAGAACAGAGAAGGTCCTGCCTACT
GAGTGAATACCATAGACATGTAGCCGTGGATTATGGCAGTAACAAGAGCT
AACAGAAAAAATAGTGCGTTGACCCAACTGAGGAGAGGAGGTCTAAAGAC
AGCACCAGGTCAACAGAAAGTGTGTTGGGTGATGAATCATGACTTAATGT
TAAGAATGCATGTGGGGAAAGCTAATAGAAGAGTTAAAGCAAGCAGGTCA
AGGTGCTTGGTCCCTCTGGATTGGTAAACAAAGAAACTAGAAGGGTATTT
TCGCATTATCATTATGTAGTTCTGCTTGATTGACATTTTTGTTTCTTGCA
CTTTGTATTTTGATTATATTCTTTACTTTCCCCCAACTTCTCCTAGATTC
TTCCCACCTCCTTACCCACCTAACTACTTGTTCTTTCTCTCTCTCTAAAA
AAACAACATCCCCAAAATTCAAAACAAACAACTCCCCGCAGGATTTAAAA
AAAAAAGCCAAAACAAAAAAACCTCAAAATTATCAAGAGGTATTTTGTTT
GTTTGATTTTTAAACACACTGCATAN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATCT
TTTAAGGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTTGTCCCCTATCTGATTTAAGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGCGTCTTTTGCCTT
GCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATCCTCGACCTTA
CAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTTCCCTGTGCCCATA
TGTTTGAGATTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGAAGTTCCTTGATCCACTTAAATTTAACCAAAGTACGAGGAG
AGAGGAATGGGTCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGC
CAGCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGC
TCCCTTGTCGAAGATGAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGT
CTTCAATTCTATTCCATTGGACTACTTTTCTGTTGGTATAACAGTACCTT
GCCGGTTTTTTCTTATTTGCTCTGTAATACAGCTTTAGGTCTGGCTTGGT
GTTTCTCCGCTAGGGTCTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_g09.b1 MSMg01no204_g09.b1 CHROMAT_FILE:
MSMg01no204_g09.b1 PHD_FILE: MSMg01no204_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:55 2005
         (315 letters)



>mm_chr1_107530297_107531006
          Length = 710

 Score =  547 bits (283), Expect = e-160
 Identities = 302/311 (97%), Gaps = 5/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattagaagtacagaacagaatggaaatgttactacccttgacaatatatagtac 64
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 600 gaattcattagaagtacagaacaggatggaaatgttactacccttgacaatatatagtac 541

                                                                       
Query: 65  agtcaataattggaaggcagaggggagaggaaacatatatgtagtgatcctactgaagtc 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 540 agtcaataattggaaggcagaggggagaggaaacatatatgtggtgatcctactgaagtc 481

                                                                       
Query: 125 ataaactagaacagagaaggtcctgcctactgagtgaataccatagacatgtagccgtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ataaactagaacagagaaggtcctgcctactgagtgaataccatagacatgtagccgtgg 421

                                                                       
Query: 185 attatggcagtaacaagagctaacagaaaaaatagtgcgttgacccaactgaggagagga 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 420 attatggcagtaacaagagctaacagaaaaaatagtgcgttgacccgactgaggagagga 361

                                                                       
Query: 245 ggtctaaagacagcaccaggtcaacagaaagtgtgttgggtgatgaatcatgacttaatg 304
           |||||||||||| |||||     |||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggtctaaagacatcacca-----acagaaagtgtgttgggtgatgaatcatgacttaatg 306

                      
Query: 305 ttaagaatgca 315
           |||||||||||
Sbjct: 305 ttaagaatgca 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 710
Length adjustment: 9
Effective length of query: 306
Effective length of database: 701
Effective search space:   214506
Effective search space used:   214506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)