BAC Information

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BAC

Clone NameMSMg01-204J06
Chromosome1 (Build37)
Map Location 159,969,608 - 159,969,946
singlet/doubletsinglet
Overlap genenone
Upstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204J06.T7 (MSMg01no204_j06.b1)MSMg01-204J06.TJ (MSMg01no204_j06.g1)
ACCAG388899
length730777
length of high quality
(start - end)
---342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no204_j06.b1 PHD_FILE: MSMg01no204_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:10 2005CHROMAT_FILE: MSMg01no204_j06.g1 PHD_FILE: MSMg01no204_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCAGCTGATCCCAGACCAATTGTGAA
CTAAATATTAGTTGTTATTTAAAGCTGCCAGATTTTAGAGTATTTGCTAT
CTTGGAAAAAAAAAAAAACAACTGGTGGAAAGGTGGTTGGACAAGTCACA
ATAAAAACATTTAGACTCTCTACCGAAGGGGAAAAATATCTTTTTGATTT
TCAGAAAAATATTAAATTTTTCTGCTACAGTTTCTTTGTAAAGCAATATT
TCCAAAAGGCAGTGTGCATTTTTCTATTTCTTTAACCAAGTGAAAAGCAG
TGCAGCTCAACCTTTCGTCAAAGCTATAAAATAAAGGAGTCTCTCAGTAG
GCTACAGTCGCAGTTTTTCCCCCCCGCACTAGTGACGTCTCAGAGAAACA
GTTGATGTGCCCAAGAAATTCTTTTCTCATATTGGGTTATCTATGACCCT
CTATTATTTTGTTCTGTTTTGTTACATATCAAATTACGATTTTTACTTGA
TTGCTATTACCATTTACCTCTTTTTCCTTATTACCCTTTTAACTCATATG
ATTTTCCACCTTTACCCTTTTATCTACAACGCGCTAAACCTACTTCTTAT
TTATTCGACCTTCTTCTTGATTTCTACCATTCTTCTTTCTTGATTCTCTT
GTTATGACAACCTTTTATTTATCTTCCGCTTAATTCGTACTTTTCTTATT
CCCCTCCATTCTATCGACTTGCATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_j06.g1 MSMg01no204_j06.g1 CHROMAT_FILE:
MSMg01no204_j06.g1 PHD_FILE: MSMg01no204_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:10 2005
         (342 letters)



>mm_chr1_159969408_159970148
          Length = 741

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccagctgatcccagaccaattgtgaactaaatattagttgttatttaaagctgccagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tccagctgatcccagaccaattgtgaactaaatattagttgttatttaaagctgccagat 480

                                                                       
Query: 61  tttagagtatttgctatcttggaaaaaaaaaaaaacaactggtggaaaggtggttggaca 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 479 tttagagtatttgctatcttgg-aaaaaaaaaaaacaactggtggaaaggtggttggaca 421

                                                                       
Query: 121 agtcacaataaaaacatttagactctctaccgaaggggaaaaatatctttttgattttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agtcacaataaaaacatttagactctctaccgaaggggaaaaatatctttttgattttca 361

                                                                       
Query: 181 gaaaaatattaaatttttctgctacagtttctttgtaaagcaatatttccaaaaggcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gaaaaatattaaatttttctgctacagtttctttgtaaagcaatatttccaaaaggcagt 301

                                                                       
Query: 241 gtgcatttttctatttctttaaccaagtgaaaagcagtgcagctcaacctttcgtcaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtgcatttttctatttctttaaccaagtgaaaagcagtgcagctcaacctttcgtcaaag 241

                                                   
Query: 301 ctataaaataaaggagtctctcagtaggctacagtcgcag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctataaaataaaggagtctctcagtaggctacagtcgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)