Query= MSMg01no204_l10.b1 MSMg01no204_l10.b1 CHROMAT_FILE:
MSMg01no204_l10.b1 PHD_FILE: MSMg01no204_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:21 2005
(542 letters)
>mm_chr1_135502755_135503696
Length = 942
Score = 973 bits (503), Expect = 0.0
Identities = 529/545 (97%), Gaps = 13/545 (2%)
Strand = Plus / Plus
Query: 5 gaattcagaagtgtgcttctcccttcaaatgtaactttatagcatgaattttcagctata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaagtgtgcttctcccttcaaatgtaactttatagcatgaattttcagctata 264
Query: 65 ggccattcaagtctgccagtgaaataaacagaaatctgtaaagccaactatctccttacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggccattcaagtctgccagtgaaataaacagaaatctgtaaagccaactatctccttacc 324
Query: 125 cagttgttttcttgactttgttttagaatgaatctcttctgcatcatctaatacgaggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagttgttttcttgactttgttttagaatgaatctcttctgcatcatctaatacgaggtt 384
Query: 185 catgtactcatcaaagccctgggaaggcaaatgacaatcattttcaagcaaatcacatcc 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 catgtactcatcaaagccctgggaaggcaaatgacaatcatttttaagcaaatcacatcc 444
Query: 245 gaccattctaaaagaataattagattcagaaatatcaacaaattttagaattttatgcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaccattctaaaagaataattagattcagaaatatcaacaaattttagaattttatgcta 504
Query: 305 tcactgatttttcaacacaaacacctacagcctctacttacttattaactactttgtatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcactgatttttcaacacaaacacctacagcctctacttacttattaactactttgtatt 564
Query: 365 cttttaccccgca-------cctgtatgtatttatttttggatcgatgtgtgcacattag 417
|||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 ctttta------aagtgttacctgtatgtatttatttttggatcgatgcgtgcacattag 618
Query: 418 gacaggtgcttaaggagggcagaggcactagatccacctgccagaagtacaggcagttgt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gacaggtgcttaaggagggcagaggcactagatccacctgccagaagtacaggcagttgt 678
Query: 478 gatccatcaaaggtatatactttgaactgaacttggtcctctgcaagaaaagtaaatact 537
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 679 gatccatcaaaggtatatactttgaactgaacttggtcctctgcaagaatagtaaatact 738
Query: 538 tttac 542
|||||
Sbjct: 739 tttac 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_l10.g1 MSMg01no204_l10.g1 CHROMAT_FILE:
MSMg01no204_l10.g1 PHD_FILE: MSMg01no204_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:21 2005
(250 letters)
>mm_chr1_135588600_135589248
Length = 649
Score = 451 bits (233), Expect = e-131
Identities = 245/249 (98%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 1 ctctgaggtggttttccttaggcactggattggaatggcacccggggcacgtaaggcctg 60
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct: 448 ctctgaggtggttttccttaggcactggattggaatggca-ccgggggaggtaaggcctg 390
Query: 61 cagcgggctggacaaacaaaagagatgatcacacacagggaaaaagattttgcttaccat 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 389 cagcgggctggacaaacaaaagagatgatcacacacagggaaaaatattttgcttaccat 330
Query: 121 ctgaggtcagttcctcctgtcttcccttgaggccccactcaccttcacaagggcaacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgaggtcagttcctcctgtcttcccttgaggccccactcaccttcacaagggcaacctg 270
Query: 181 gccaccagtctctagagcaaggaatccagtgcagaatccgagattggtttgttgttttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gccaccagtctctagagcaaggaatccagtgcagaatccgagattggtttgttgttttgg 210
Query: 241 tttattttt 249
|||||||||
Sbjct: 209 tttattttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 649
Length adjustment: 9
Effective length of query: 241
Effective length of database: 640
Effective search space: 154240
Effective search space used: 154240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
