BAC Information

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BAC

Clone NameMSMg01-205B09
Chromosome1 (Build37)
Map Location 117,941,578 - 117,941,858
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream geneLOC227506
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205B09.T7 (MSMg01no205_b09.b1)MSMg01-205B09.TJ (MSMg01no205_b09.g1)
ACCAG389201AG389202
length725731
length of high quality
(start - end)
680 (46 - 725)304 (428 - 731)
definitionCHROMAT_FILE: MSMg01no205_b09.b1 PHD_FILE: MSMg01no205_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:52 2005CHROMAT_FILE: MSMg01no205_b09.g1 PHD_FILE: MSMg01no205_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGATTTCCTTTAATTTATTTTTTACTCTCCATATTCTACTCCC
TGCCCCACCCCCATCTACCTTCCGATTGCTCCTCGTCCCACACCAGCTAC
CCACCCTACCCTGACCCACATGGATGCCCCCGCCCCCACCCCTCCTGACC
AAATTCATTGTTTTTAATAACTGAGTAGCACTCCATTGTATAAATATACC
ACATTTTCCGTATCCATTCCTCTGTTGAGGGATACATCTGGGTTCTTTCC
AGCTTCTGGCTATTGTAAATAAGACTACTATGAACATAGTGAAGGAGCAT
GTGTCCTTGTTACATGTTGCAGCATCTTCCGGGTATATGTCCAGGAGTGG
TATAGCTGGGCCCTCACCTAGTAGTATATCCAATTTTCTGAAGAACTGTC
AAACTGAGTGGTTGTACCAGCCTGCAATCCCAACAGCAATGAAGGAGTGT
TCCTCTTTCTCTACATTCTCGCTATCATCTGCTGTCACCTGAGTTTTCGA
TCTTGGCCATTCTGACTGGTGTGAGGTGGAATCTCAGAATTGTTTACATT
TGCATTTTCCTGATGACTAAGGATGTTGAACATTTATTTAGGTGCTTCTC
TGCCACTCGATATTCTTCATTTGAAAATTCTTTGTTTAGCTCTATACTCC
ACTTTTTAAAAATAGGGTTATTTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCCTTTCTGAGAAACAGATAA
AATATCTATTTTTTTTCCTTCTGAAAAAGAGAGCTACTGTATAAAAGTTG
ACAGCAGGGCTTGGCCTACTGTTATTGGATTTAAGGTAAGATTTGAAATT
TTTATAAGGGCAAAACCCAGAACTAGGGGAGCTGACTTATGTGTCTAAGG
TAAGTCCCCAGGACAAAGTAAGTAATGAAACCAACATAGAAGACTGGTTA
AGATTGTTAACCAGTGCCGGGCGATGGAAGCTCACGCCTTTAATCCCAAC
ACTTGTTTTGTACACCCCCCCGCCATCTCTGAGTTCGAGGCCAGCCTGGT
CTACAAAGTGACCCCCAGGACAGACAGGGCTACACAGACGAACCTTGTCT
CGAAAAACCAAAAAACCAAAACCAAAAAACAAAACAAAACAAAACAAAAC
AAAACAAAACAAAACAAAACAAAACAAAAAGATTGTTAACTAGTTTACAT
GTATAAATGGCAATGACTCCATAATGTAATCCTGCTAAATACATTCACAA
GCTTAATCATATGCTGAACATATTGCCAATTGATAAGTATAACACAATAT
ATATGAATATATATGTATAAGATTTGAAATCTCTCATCTATCTAATGTCT
ATCTTCTATCAATTATTCTGAATCTTCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_b09.g1 MSMg01no205_b09.g1 CHROMAT_FILE:
MSMg01no205_b09.g1 PHD_FILE: MSMg01no205_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:52 2005
         (304 letters)



>mm_chr1_117941276_117941979
          Length = 704

 Score =  466 bits (241), Expect = e-136
 Identities = 277/303 (91%), Gaps = 22/303 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctacacagacgaaccttgtctcgaaaaaccaaaaaaccaaaaccaaaaaacaaaacaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggctacacagacaaaccttgtctcgaaaaaccaaaaaaccaaaaccaaaaaacaaaacaa 524

                                                                       
Query: 61  aacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaagattgttaactagttta 120
           ||||||||||||||||                      ||||||||||||||||||||||
Sbjct: 523 aacaaaacaaaacaaa----------------------aaaaagattgttaactagttta 486

                                                                       
Query: 121 catgtataaatggcaatgactccataatgtaatcctgctaaatacattcacaagcttaat 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 485 catgtataaatggcaatgactccataatgtaatcctgctaactacattcacaagcttaat 426

                                                                       
Query: 181 catatgctgaacatattgccaattgataagtataacacaatatatatgaatatatatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 catatgctgaacatattgccaattgataagtataacacaatatatatgaatatatatgta 366

                                                                       
Query: 241 taagatttgaaatctctcatctatctaatgtctatcttctatcaattattctgaatcttc 300
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 365 taagatttgaaatctgtcatctatctaatgtctatcttctatcaattattgtgaatcttc 306

              
Query: 301 ctg 303
           |||
Sbjct: 305 ctg 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)