BAC Information

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BAC

Clone NameMSMg01-205K13
Chromosome1 (Build37)
Map Location 155,731,974 - 155,732,287
singlet/doubletsinglet
Overlap genenone
Upstream geneSmg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365
Downstream geneTeddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205K13.T7 (MSMg01no205_k13.b1)MSMg01-205K13.TJ (MSMg01no205_k13.g1)
ACCAG389568AG389569
length712771
length of high quality
(start - end)
321 (46 - 366)32 (77 - 108)
definitionCHROMAT_FILE: MSMg01no205_k13.b1 PHD_FILE: MSMg01no205_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:34 2005CHROMAT_FILE: MSMg01no205_k13.g1 PHD_FILE: MSMg01no205_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGACTCCTGGCAAGGTCCCTGGCCTCTGAAGTGGTGCTGGAGCAG
GCAGCCAAAGATCAGGACTAGAACCCATAAGTTTACACATTCTACAACGA
TAGTATAGAAAGAACTAGATTTGGCTGGTTAAAAGATGCGCCATACCTGA
TTTAAAACAAAACAAAACTCCAGAGTGTCACCATGACAACAGGGCTAGGC
TTTGTTATGTTGGGATTGTGTCATTAGTCCATATTCCTATCACCAACACG
GTGTCTGAGCTCTTTTTAGAACAGCATGTTTCAGTTTGGGGACTGAGAGG
CTGATAAAATTATGTTATACACATTCACTACTTGTTTTGTGATTTAAAGA
TTTTTTTAAAAGGCAATCCCCCACTTGATTAATAAAAAAAAAAGAAAGCC
AAGCTGGGTGTGGTGGCGCACCCCTTTAATTCCAGCACTCGGGAGGCAGA
GGCAGGCCGATTTCTGAGTTTGAAGCCAGCCTGGCCTACAAAGTGAGTTC
CAGGACAGCCAGGGCTATACAGAGAAACCCTATCTTGAAACACCCCCCAC
CCCAAACTTTGATTCTATGGCATAGAGACTGTCTAGGTGGTGTTACAGGT
AATTCACATGCATATAACTGTATTGCGCTTTCAGCTAAAATGCTAGTTCT
GAGGGCAAGATN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTCCCAGTGGTGGTGGTGGTG
GGGGGGTNNNNTNNNNTTTTTTTACCCCTATAAATNTTGTTTTCTTTATT
AATATAATTTCTCTATAATTTTTATTTTATATTAAACTATTTTTTACCCC
CCACCTATACAGCAAAGTCTACTACTCCTTATACAACTCAGTCCATTCTA
CATTAACTTCTCCTATTATCTTGTCTGCCATCCTCCCCATTTACACCTCC
CCTTTTTGGATCATTACACACTAAACCAACGAATTTTTTTTTTGAAAGTG
AAAAATATCTAATTAGAAAGAGAGTTTTGTGATTCCCCCCCCCCCCCCCC
TTGATTTTATTGATGGGGATTGGGGGAGTGGCCCAAACTTCGTGTTAAAA
AAAAAAATAAGTGGGGGGGGGGGGGGGTTCCTAGTCCTACCCCCGCGGAG
GTCTTGCGTCCGGATTGAATTAGATCATTACCCTACATTTATTACGCCTT
TCCTTTGATATGGCGGTTTGCTATTTGGTATTATCAGGTGGGCTAGGTCT
TCCTGCTCTTCTACTACTGTATTCTTTTTACAGCTTATGGGGTGGATATT
TGCCGGCATACTTTGCGGCCTTTCTTTTCTACGATTGATCCCCTTCCAGG
AGGGGCTCCACTCACATGGTGCGTGCGTATTCCGTCTTCTGAGCGCTTGT
TGTCGGTTCCTTTCGAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_k13.b1 MSMg01no205_k13.b1 CHROMAT_FILE:
MSMg01no205_k13.b1 PHD_FILE: MSMg01no205_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:34 2005
         (321 letters)



>mm_chr1_155731770_155732489
          Length = 720

 Score =  578 bits (299), Expect = e-169
 Identities = 311/317 (98%), Gaps = 5/317 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagactcctggcaaggtccctggcctctgaagtggtgctggagcaggcagccaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagactcctggaaaggtccctggcctctgaagtggtgctggagcaggcagccaaa 264

                                                                       
Query: 65  gatcaggactagaaccc--ataagtttacacattctacaacgatagtatagaaagaacta 122
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatcaggactagaa---gtataagtttacacattctacaacgatagtatagaaagaacta 321

                                                                       
Query: 123 gatttggctggttaaaagatgcgccatacctgatttaaaacaaaacaaaactccagagtg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gatttggctggttaaaagatgcgccatacctgatttaaaacaaaacaaaactccagagtg 381

                                                                       
Query: 183 tcaccatgacaacagggctaggctttgttatgttgggattgtgtcattagtccatattcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcaccatgacaacagggctaggctttgttatgttgggattgtgtcattagtccatattcc 441

                                                                       
Query: 243 tatcaccaacacggtgtctgagctctttttagaacagcatgtttcagtttggggactgag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatcaccaacacggtgtctgagctctttttagaacagcatgtttcagtttggggactgag 501

                            
Query: 303 aggctgataaaattatg 319
           |||||||||||||||||
Sbjct: 502 aggctgataaaattatg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)