Query= MSMg01no205_l11.b1 MSMg01no205_l11.b1 CHROMAT_FILE:
MSMg01no205_l11.b1 PHD_FILE: MSMg01no205_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:39 2005
(658 letters)
>mm_chr1_18983773_18984833
Length = 1061
Score = 1112 bits (575), Expect = 0.0
Identities = 615/631 (97%), Gaps = 6/631 (0%)
Strand = Plus / Minus
Query: 34 cagactcctacccttgtgctctccccacaaaagggaaagaatacatcaagttcaatttgt 93
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1061 cagactcctacccttgtgctctccccacaaaagggaaaaaatacatcaagttcaatttgt 1002
Query: 94 gttgcccataaactcactggagcatggttaaacttcccagtggccatccctctaaagaca 153
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 1001 gttgcccataaactcactggagcatggttaaacttcccagtggacatccctctaaagata 942
Query: 154 ctctccccccc---cacacacaccaaaaaccatctttactgtaaagacctacactcagcg 210
||| ||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct: 941 ctcccccccccccacacacacaccaaaagccatcttgactgtaaagagctacactcagcg 882
Query: 211 tcttcattacaattttaaaggaaatggcctcagatgacagcacggaccatgaaagtcttt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tcttcattacaattttaaaggaaatggcctcagatgacagcacggaccatgaaagtcttt 822
Query: 271 ggagaaggctcagtccagaaaatgaaccattctccatcttggttatcctactgttgctca 330
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 821 ggagaaggctcagtccagaaaatgaaccattctccatcttggctatcctactgttgctca 762
Query: 331 gagcaagggtgatcatacagctgggcagcatgataggggacatagcccatgcgagttcca 390
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gagccagggtgatcatacagctgggcagcatgataggggacatagcccatgcgagttcca 702
Query: 391 gcctgctgcatactacactgctggctaccctgaccaccatatcaattcttctacacttca 450
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggctgctgcatactacactgctggctaccctgaccaccatatcaattcttctacacttca 642
Query: 451 gtatctctagctacacttatccccaaaggctctagttttgcttctctctgaggctcaatg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gtatctctagctacacttatccccaaaggctctagttttgcttctctctgaggctcaatg 582
Query: 511 cactttgctcatcttgccaatttcacaaagccactctttaatactcttcctatgagatct 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cactttgctcatcttgccaatttcacaaagccactctttaatactcttcctatgagatct 522
Query: 571 gctttgt---ctcccagtttttctggaaatactgtgggctctatatgctcactgagctgc 627
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gctttgtctcctcccagtttttctggaaatactgtgggctctatatgctcactgagctgc 462
Query: 628 catgtttcccctcatgccctccatgggtctc 658
|||||||||||||||||||||||||||||||
Sbjct: 461 catgtttcccctcatgccctccatgggtctc 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1061
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1051
Effective search space: 681048
Effective search space used: 681048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_l11.g1 MSMg01no205_l11.g1 CHROMAT_FILE:
MSMg01no205_l11.g1 PHD_FILE: MSMg01no205_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:39 2005
(355 letters)
>mm_chr1_18903329_18904082
Length = 754
Score = 600 bits (310), Expect = e-176
Identities = 343/354 (96%), Gaps = 1/354 (0%)
Strand = Plus / Plus
Query: 1 ttctggtgatgaccttctgattacttcatccaagtgtggaagatagaaaggcaaaaatgt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctggtgatgaccttctgattatttcatccaagtgtggaagatagaaaggcaaaaatgt 260
Query: 61 acaaccatcactgcagagggggaagaaaagcttaagcttctctcaggaaccagctgggct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 acaaccatcactgcagagggggaagaaaagcttaagcttctctcaggaaccagctgtgct 320
Query: 121 aatagtctgctccctccagtgataattgccttaatccaaccatgaattcaaagttcttag 180
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aataatcagctccctccagtgataattgcctgaatccaaccatgaattcaaagttcttat 380
Query: 181 gatctaataacccaagtatttttttttcttttcagttaggatttttctattttggacaat 240
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gatctaataacccaagt-tttttttttcttttctgttaggatttttctattttggacaat 439
Query: 241 ctggtgtcatactcatgaatgtggcacttcttctccttactttcctgagttactaggaat 300
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 ctggtgtcgtactcatgaatgtggcacttcttctccttaccttcctgagttactaggaat 499
Query: 301 acagggcacacataaccttaatgagtttctaaccattagttaaatcattgtatc 354
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 acagggcacacataaccttagtgagtttctaaccattagttaaatcattgtatc 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 754
Length adjustment: 9
Effective length of query: 346
Effective length of database: 745
Effective search space: 257770
Effective search space used: 257770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
