BAC Information

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BAC

Clone NameMSMg01-205M21
Chromosome1 (Build37)
Map Location 149,156,449 - 149,156,682
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571, B830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205M21.T7 (MSMg01no205_m21.b1)MSMg01-205M21.TJ (MSMg01no205_m21.g1)
ACCAG389658AG389659
length725731
length of high quality
(start - end)
340 (384 - 723)234 (131 - 364)
definitionCHROMAT_FILE: MSMg01no205_m21.b1 PHD_FILE: MSMg01no205_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:45 2005CHROMAT_FILE: MSMg01no205_m21.g1 PHD_FILE: MSMg01no205_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTAACAACTGGGATCAAAAAGGGCTCCACCTAAGATTCACT
TAATCTTAGAAGCCAGGGTTAAGGCCTTCATGCCCTTGCCATAGTTCCTA
TTTTAGTCTATTGTATAGTCCACCTTCCCCTTAGGCCATTGTAAATACGT
GTGTATGGGTGTAACTCAGCTATAGTCTAGAAGCCAGGTGTGAGGTCTTT
ACTTTCCTACTTCAAGGGCTTTCACACCCAAGTCATGGTTCTAACTAGGG
AGTTCAGTTCTAGCTAACCATCTCATGAATAATGCAATACTCTAAAACCA
TAGCCCGATCTACTTTCTAAACCATTCGCACATTCCTGTATATGGGAGCG
ACTTGGCTTTTATTGATAGCGCAACACCAGAGGCTATTCTGAATGTCACT
GTCTAGCTCAAGGACGTTCTAGGACTGTTGGAACACTGGCAGAAGACTTT
AGCTATGTCAGAATTCAATTTTAAAAGACACTTATAATAAAGAGAACACG
TGGATCCATCCTAACTCGGGAATGAAAAATTTAGAGAGCACGCCAGACTC
CAGGAGCGAGTTTCTGTGAAACTCTTTTTGCTTCATGAGCAGTTTTTAGG
CATCCCTGCTTGACAGGCTGACTTGACCGGAGTGCCTTGGCATGTANAGA
TACATAAAATGTGCCTATATGTTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGTATTTAACTAACAGGAAAT
GCTTTGACCAAGACACCTGAATACACCCCGATTTGGTGGGACAGTTGAGT
ACTTTTAGACAGTCTCATTTCTTGGTGAACAATACACCCTGGGTTTGCAT
TTGGAACAAACCCAGGCTTGGCTTGCTCTCTAGCACTCAAACACTAGTAA
CAAACCCAAAACAGACTCCAGCAAATCTGGACTTGGGTATCATCCAAAGC
TGAAATTGTGTAAATGACGAGAGAAGTCTGAGAATATAAGCAGCCTGCTT
AGCACTTCTGGAAATATTTTCTCACACAAAGCCAAATTAGGAATATTGTA
ATAAAGGCATAATCTTTCAACGCCCACCAGATTTATTATGCCAACAAACA
TCAGAAATTAAATGGAATCCTCAACATATATTACAAGATATTTGTGAAAG
CTCACAGAAAATTTAAAATTGAACAACAACATCAACAAAAATATTTCACA
CAAACACACACACACACACACACACACACACACACGGAGGGGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGACNNNGAGAACATCCNATTAA
ATATCTTCTCATAGAANAGAAAATAATAAAATGAGAAAATTTGGAAAATA
TTTTTAAACTCCTCATCTAACATGGAGATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_m21.g1 MSMg01no205_m21.g1 CHROMAT_FILE:
MSMg01no205_m21.g1 PHD_FILE: MSMg01no205_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:46 2005
         (234 letters)



>mm_chr1_149156249_149156882
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttggtgggacagttgagtacttttagacagtctcatttcttggtgaacaatacaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atttggtgggacagttgagtacttttagacagtctcatttcttggtgaacaatacaccct 375

                                                                       
Query: 61  gggtttgcatttggaacaaacccaggcttggcttgctctctagcactcaaacactagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gggtttgcatttggaacaaacccaggcttggcttgctctctagcactcaaacactagtaa 315

                                                                       
Query: 121 caaacccaaaacagactccagcaaatctggacttgggtatcatccaaagctgaaattgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caaacccaaaacagactccagcaaatctggacttgggtatcatccaaagctgaaattgtg 255

                                                                 
Query: 181 taaatgacgagagaagtctgagaatataagcagcctgcttagcacttctggaaa 234
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 254 taaatgacgagagaagtctgagaatataagcagcctgcttaacacttctggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)