BAC Information

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BAC

Clone NameMSMg01-206D08
Chromosome1 (Build37)
Map Location 5,836,516 - 5,836,799
singlet/doubletsinglet
Overlap genenone
Upstream geneLypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659, Oprk1
Downstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946, St18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206D08.T7 (MSMg01no206_d08.b1)MSMg01-206D08.TJ (MSMg01no206_d08.g1)
ACCAG389910AG389911
length743747
length of high quality
(start - end)
285 (128 - 412)349 (73 - 421)
definitionCHROMAT_FILE: MSMg01no206_d08.b1 PHD_FILE: MSMg01no206_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:18 2005CHROMAT_FILE: MSMg01no206_d08.g1 PHD_FILE: MSMg01no206_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGTTATCTCATTTAGCACATTTACTTTATGATTGGCCACGTAAT
GGTGATAAGACGTCATCACTTACTGTCATCCTTAAATGTCTTTCAAGTTC
CTGACCCAGGATCTGAGACTGCAATTCTAGCATGCTTAGGTAGATAGGAG
AGTTACACAGTAAAGATACTACATATTGTCAAGATTATTTTAAGTTTACC
AATGTTCTTTACTAAGTAGTTGTTACCCAGGATCATCTTGCCCACCCTGC
AGAATTATGGTTTATTTTTTTAATAAAAACACAGGGTGACTTAATGGGAG
ATGAGGGTCTAATGTTATTTGCAGCTGTATGCTGTCCCCTTTAACTAGAG
ATGAGCCTAGTGACCGCCCAGTCCTGGTGAACAAACATTTACACCTTAGC
ATCATCAATTTCCCTTGCCTCTATCAGGCCGAACAGACTACTTGTCTTTC
GGGTATTTGGGGAGTAGCACTTCCATAATTAACTTCTATTCTCTATGTCT
TAATGTCTCCTAAGCATATCTTTTACAAAGAAATCTTTCAACATCAATTC
TATTAGTTTGAGTTTCTTCTGAATCATGTCCTCTTGGTTAGAACTGCTAC
AAACTTCTTATAAGCCCCAATTTAAAATTCTGTGTCATAGAGGTCTGTAA
ATTCGGGGTCTTCTTGCCTGACTTCCTGACAAACTACTTCAGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGA
AGCACCTGAAAAAAATGTTCACCCCCCTTAATCATCAGAGAAATGCAAAT
CAAAGCAACCCTGAGATTCCACATCACACCAGTCAGAATGGCTAAGGTCA
AAAATTCAGGTGACAGCAGATGCTGGCAAAAATGTGGAGAACGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTGGTACAAATATTCTGGAAATC
AATCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGGTCTAG
CAATACCTCTCCTGTTTTATATACCCAGAAGACGTTCCAACTGGTAATAA
GGACACATGCTCCACTATGCTCATAGCAGCCATATTTATAATAGCCCGAG
GCTGGAAATAACCCAGATGTCCCTCCACAGAGGAATGGATACAGAAAATG
TGGCACATATACATAGTGGAGTACTACTCAGCAATTAAAAACAATGAATT
TATGACATTCTTAGGCCAATGAATGGATCTGGAGGATACCCTCTTGAGTG
AGGTACCCCTGTCTCATAAGAACATCCTTGATATGCCCTCACCGACCACC
ACAAATTTATGACTACCCATGATATAATTTGCATAACACATGAAACTCCA
GAGTAACTAAGACCAAAGTTGTGAATACCTCCGCTCCTTCTTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_d08.b1 MSMg01no206_d08.b1 CHROMAT_FILE:
MSMg01no206_d08.b1 PHD_FILE: MSMg01no206_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:18 2005
         (285 letters)



>mm_chr1_5836316_5836999
          Length = 684

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccttaaatgtctttcaagttcctgacccaggatctgagactgcaattctagcatgctt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccttaaatgtctttcaagtccctgacccaggatctgagactgcaattctagcatgctt 260

                                                                       
Query: 61  aggtagataggagagttacacagtaaagatactacatattgtcaagattattttaagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtagataggagagttacacagtaaagatactacatattgtcaagattattttaagttt 320

                                                                       
Query: 121 accaatgttctttactaagtagttgttacccaggatcatcttgcccaccctgcagaatta 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaatgttctttactaaatagttgttacccaggatcatcttgcccaccctgcagaatta 380

                                                                       
Query: 181 tggtttatttttttaataaaaacacagggtgacttaatgggagatgagggtctaatgtta 240
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tggtttatttttttaataaaagcacaggg-gacttaatgggagatgagggtctaatgtta 439

                                                        
Query: 241 tttgcagctgtatgctgtcccctttaactagagatgagcctagtg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgcagctgtatgctgtcccctttaactagagatgagcctagtg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)