BAC Information

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BAC

Clone NameMSMg01-206O18
Chromosome1 (Build37)
Map Location 187,861,076 - 187,861,412
singlet/doubletsinglet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206O18.T7 (MSMg01no206_o18.b1)MSMg01-206O18.TJ (MSMg01no206_o18.g1)
ACCAG390351AG390352
length749848
length of high quality
(start - end)
341 (46 - 386)181 (78 - 258)
definitionCHROMAT_FILE: MSMg01no206_o18.b1 PHD_FILE: MSMg01no206_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:15 2005CHROMAT_FILE: MSMg01no206_o18.g1 PHD_FILE: MSMg01no206_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTCACAGGAGCCAATTGAAGCGTCCTGAACTGCCGTCATCAGGT
GCCTAAGAAAAACACAGTTAAATCCCAGTCAACACACTTCTATTTATTTA
CTTAGAGATTTGATGGGGAAAATGAAATCACACAAAAACGGTTGTCATTC
TAAATGAGGTGAGTTGAAAAAGCCTAACATCAAAAAGAGTGAGCTCCCCC
ACCCCCATGACATCATCAGAGAGACGCAACGAAGATCTTATGTGGCTCTA
ACCCAGTGTTTCAAGGCAGTGATATCCAATAAGGTCAGACTGCTAGGGTC
TTTATATATGATTACCTTCTCTGAAAATTACTCAACTTTGCAGACACCCA
AAATGAGCTCATGCGACCCCCCAATGCGATAAATAATCCTAGCTCATGTA
ATTGAGTTTTACAGTGTGCGTGACTCACCTGAAGACATATTCCCTCTGGA
ATGAGCTAGGTGTGAAAGTACCTACTGAATGTGACGTAACAAGATAGTTG
CAGCTTTGTGTAAAAGAGCTGGTTTCTTGGTGTTGTTAAACTTACAAAGA
TAGCTATCCTTATCTATCACTGCCATTCTAGTTCTGACAATAATAAGTTA
TATCTGGATGTATAATCCCAAAGCCTGTGTGCCAATTAATATGATATTAT
ACTTTATCTACTATTTAGATGGTGGAATTGGCCACCATTGGCCCCATGG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTATTTGTACATGAAATATTA
GTTATGTGCCCATTAGTCCATTTCTACTGTATAACAAAATATCCTAGGGT
AGGAATTTATAGAGAACTGAATTTACATTTTATAGGTATAGAAACTAGGA
AGTTCAGGATCAAAACACAGGCAGATTAAATGACTGGTAAAGATCCAGGT
CTTGGTTCAAGATGGCGCCTTCCTTCTTCTTAGAACTGGTAAGACAACGT
ACCAGGAATTGTACTAGCTACCCGTTTTTTTTTTTTGACCCGACTATTTT
TATTTCTGTTGTTTTGTTTTTTTTTCTCCCCCCCCCCTCCCTTTATCCTC
TTTTTTTTTCTCCTTATATTTTTTCCACCCCCTTTTTTTATAAAAAAAAT
TTCTTTTTGGGGGTTTTTCTCCCTCCCTTTCTCTCTTCTTGTTTTTTTTT
TTCTCTCTTTCCCCTCCCCATATCCTTATTCTTTCCCTTCTCTTCTTCCC
ATCTTTTTCCTTATTTTGTTTTTTCCTCCCTTTTTTTCCCCCCCTTTTCT
TCTTCTTCTTCTCTTGTCTCCCTCCTTTCCCATTTTTTTCCTTCCCCCAT
TTATGCCTTCCTTTTTCTCTGTTTTTTTCCCCTCTCTATCTCATTTCTAT
TCTATTTTTTCCCTTTTTCGCGTTTTTTTTTTCTCTTTGTCTCTTTTTTT
TTACTACTCTTTTTGCCTCGTCTCTATTCTATATTCTTTCTTCGATTGTC
CTACATTGCTCATTCCCATTTTGATCTTTATTTTCCTCCCGCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_o18.b1 MSMg01no206_o18.b1 CHROMAT_FILE:
MSMg01no206_o18.b1 PHD_FILE: MSMg01no206_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:15 2005
         (341 letters)



>mm_chr1_187860872_187861612
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 332/337 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtcacaggagccaattgaagcgtcctgaactgccgtcatcaggtgcctaagaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcacaggagtcaattgaagcgtcctgaactgccgtcatcaggtgcctaagaa 264

                                                                       
Query: 65  aaacacagttaaatcccagtcaacacacttctatttatttacttagagatttgatgggga 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacacagttaaatccaagtcaacacacttctatttatttacttagagatttgatgggga 324

                                                                       
Query: 125 aaatgaaatcacacaaaaacggttgtcattctaaatgaggtgagttgaaaaagcctaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatgaaatcacacaaaaacggttgtcattctaaatgaggtgagttgaaaaagcctaaca 384

                                                                       
Query: 185 tcaaaaagagtgagctcccccacccccatgacatcatcagagagacgcaacgaagatctt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tcaaaaagagtgagctcccccacccccatgacatcatcagagagacgcaatgaagatctt 444

                                                                       
Query: 245 atgtggctctaacccagtgtttcaaggcagtgatatccaataaggtcagactgctagggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 atgtggctctaacccagtgtttcaaggcagtgatatccaataaggtcagtctgctagggt 504

                                                
Query: 305 ctttatatatgattaccttctctgaaaattactcaac 341
           ||||||||||| |||||||||||||||||||||||||
Sbjct: 505 ctttatatatgtttaccttctctgaaaattactcaac 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)