BAC Information

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BAC

Clone NameMSMg01-207F09
Chromosome1 (Build37)
Map Location 90,120,325 - 90,120,899
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream geneLOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207F09.T7 (MSMg01no207_f09.b1)MSMg01-207F09.TJ (MSMg01no207_f09.g1)
ACCAG390601AG390602
length1,2251,241
length of high quality
(start - end)		585 (52 - 636)750 (72 - 821)
definitionCHROMAT_FILE: MSMg01no207_f09.b1 PHD_FILE: MSMg01no207_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:09 2005CHROMAT_FILE: MSMg01no207_f09.g1 PHD_FILE: MSMg01no207_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATGTTNNNNNNAACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCATTTCTCCTTATTCTCTTGGATCTTGCTGCATTGCA
ATGAGAACTACCCGAGTGACCCTTGCCATATGGCACCTCCACACTAATAT
CTTCTCTGCCAACAGCAAGCCCTTTGCACAAAGTGACTCCAGTCGTACTT
AGCTAGATGCGACCCAACTCAGCACAGCTAGGTGACCTGTAGACAATAAT
TTGTTGTTTCAGACATTAAATTTTGAAAATGTTTGGTACACATCAATTGC
TGACACATTTACTTCTGGTTCTAACCCATACAATACTTGTGTATTATATC
TGAAGACCCCAGAGGGCAAAGGCATGTTCTAGTCCTGTATCCACATGGAC
AACAGAAAACATGCTTAGCCAAACCTGGTAGACTTGCAGTCAACACACAT
AGTTTTTAACCCCAATCATATGACTTGAGAGATCAATGAAGGTCATGAGA
AGGCCCAGTGGGGAAGTGGAGAGGATGTTGTGAACAACTGTCTTTATATT
TTGTTTCATGTTGACTAATGTGTCTCCAATGGCCAGAATGAGGAACAGTG
CTGGGGTTTATGGGAAAGATGTATTTGGTGTGNAGTGNNNNNTANTNTTT
TTTTTTTTTATTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTATTTTTTTTATTTTTTTTTTTTTTTATTTTATTTTATTTT
TATTTTTTTTATATATTATTTATTATTATTATTTAAATTATTTTTTATTT
TTAATTATATTAATAATTTATTTTTTTTTTATTNTTTTTTTATATTTTTT
TTAAAATATATTTATTTTTATTTTTATTTTTATATATTTAAATAATATTC
TTTTAAATATTTTTTTATTTTTTTTTTTATTATATTTTAATTTTTTTAAT
ATTTTATTTTTTTTATTTTTAATATATATTTTTTTATATTATTTAATTTA
TTTATTATTATATTTTTTTATTTTATTNATTTTTTATTTATTTTTTTTTA
TTATTATTTTTTTATTTTATTTATTTTTTATTTTTATATTAATTTTTTTT
TTTAATTTTTTATTTTTTTTAAATTTTATTTTTATTTTATTTAATTTTTT
ANTTATTTNTTTATTTACTTATTTTTTTTTTTTTTTTTTATATNTTATTT
TTATATTTTTTATAATATTTTATTT

NNNNGGGCAGATGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCTCTGCCTTAACCACTTGTTGACAG
GTGAAAAGGAACAAAAAGGCTTCTAACACTGGAGAAAGTTCAAGGCCAGT
CATACCTCGTAAAACTGTAATTTGTCCCGCAGTTCTGGTTCTGCCTCACG
AACGAGGGATCTCCCTTGCACCAGTGTGATGGTAGTTCCCGGTTTCTTGG
CACCACTTATTGCCCGAGCTTTTGTCCCCGCCGGCAAGAACACACTCAGG
ACAACTGGAATCTTCTGCGGCAAAGCTTTTATTATTTACTTATCAGGAGG
GAAGACCCTGAACCGGGAAAATGGCACTGCTTATATAGCCTGCAGCGTGA
CGTTTCAGCACCCAATGTGGCGTGATAGCTCCTGATTCGTTGCTCACCCA
TCAGTCTTTTACTTCCCCACTAGATGGGCAGTGACTAGGCGTGAGTTCAC
TCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGTCACAGTGGAAGCC
AGCGCCATCTTATAATGGCTATCACTCACGGCACGCACGCGATTGCTCGC
GGCAAGGCTCTCCACACATGATCAAGTAGACTTCATACCAGCGATGCAGG
AATAGTCCAATATGGATTAATGTGATCCAATATATAAAGAAATTCAAAGA
AAAAACATGTCAACATTTTATTGGATTTGGAGAAAGCATTTGGAAATATG
TAACACCTCTTCATGATAAAAGTCTTGGAAAGATCAAGAACTCAAGGCCA
ATTCCTAAACATAATAAAAGCAATATATAGCAAAACAATAGCCAAATCAG
ACTAAGTGGAAAGAAACTTGAAGAAATCCCACTAATGTCATGAACTTAAA
CAGACTGCCCACTCTCTCCTTTTGAATTCAATATAGTATTCAAATTCCCT
AGCAGAGCAATTAGACCAAGAAATGGAGTTCCAAGGGGACCAATATTGGA
AATTAAGAAATTAAAGGGTTTCCCTATTTTTTGTAATAAATGGAAGGTTT
TTAAAAGTGGTCCTCCATAAATTTCCCCCAAAAAAATCCTTTAAGTTGAA
TAAAAAATTTTATATAAATGGAGTGGGATTTTAATATATTTTCAGCGTAA
TTCATTTGCCCTCTCTTTCTCCCATAGCTTCTATTAATTTGTGTAATAAA
TAAACTTTTTTTATAACACCCTCCTTCATTATATCATATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_f09.b1 MSMg01no207_f09.b1 CHROMAT_FILE:
MSMg01no207_f09.b1 PHD_FILE: MSMg01no207_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:09 2005
         (585 letters)



>mm_chr1_90120119_90121103
          Length = 985

 Score = 1035 bits (535), Expect = 0.0
 Identities = 565/575 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcctcatttctccttattctcttggatcttgctgcattgcaatgagaactacccgagt 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcctcatttctcctcattctcttggatcttgctgcattgcaatgagaactacccgagt 266

                                                                       
Query: 67  gacccttgccatatggcacctccacactaatatcttctctgccaacagcaagccctttgc 126
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 267 gagccttgccatatggcacctccacactagtatcttctctgccaacagcaagccctttgc 326

                                                                       
Query: 127 acaaagtgactccagtcgtacttagctagatgcgacccaactcagcacagctaggtgacc 186
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 acaaagtgactccagttgtacttagctagatgtgacccaactcagcacagctaggtgacc 386

                                                                       
Query: 187 tgtagacaataatttgttgtttcagacattaaattttgaaaatgtttggtacacatcaat 246
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 387 tgtagacaataatttgttgtttcagacattgaattttgaaaatgtttggtacacatcaat 446

                                                                       
Query: 247 tgctgacacatttacttctggttctaacccatacaatacttgtgtattatatctgaagac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgctgacacatttacttctggttctaacccatacaatacttgtgtattatatctgaagac 506

                                                                       
Query: 307 cccagagggcaaaggcatgttctagtcctgtatccacatggacaacagaaaacatgctta 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cccagagggcaaaggcatgttctagtcctgtatccacatggacaacagaaaacatgctta 566

                                                                       
Query: 367 gccaaacctggtagacttgcagtcaacacacatagtttttaaccccaatcatatgacttg 426
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 567 gccaaacctggtaggcttgcagtcaacacacatagtttttaaccccaaacatatgacttg 626

                                                                       
Query: 427 agagatcaatgaaggtcatgagaaggcccagtggggaagtggagaggatgttgtgaacaa 486
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 627 agagatcactgaaggtcatgagaaggcccagtggggaggtggagaggatgttgtgaacaa 686

                                                                       
Query: 487 ctgtctttatattttgtttcatgttgactaatgtgtctccaatggccagaatgaggaaca 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgtctttatattttgtttcatgttgactaatgtgtctccaatggccagaatgaggaaca 746

                                              
Query: 547 gtgctggggtttatgggaaagatgtatttggtgtg 581
           |||||||||||||||||||||||||||||||||||
Sbjct: 747 gtgctggggtttatgggaaagatgtatttggtgtg 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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