BAC Information

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BAC

Clone NameMSMg01-207O14
Chromosome1 (Build37)
Map Location 97,825,913 - 97,826,321
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207O14.T7 (MSMg01no207_o14.b1)MSMg01-207O14.TJ (MSMg01no207_o14.g1)
ACCAG390976AG390977
length1,2561,199
length of high quality
(start - end)		412 (44 - 455)322 (86 - 407)
definitionCHROMAT_FILE: MSMg01no207_o14.b1 PHD_FILE: MSMg01no207_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:27 2005CHROMAT_FILE: MSMg01no207_o14.g1 PHD_FILE: MSMg01no207_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGATCATTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGAGGAAATCTTTTCAAGTAATATACAGTAAACCTAGTTGAATTAA
TGTTTTCAATATAAATATTTCCGCAATTATAATAGCTATCATATACAGAC
AGTTGATAATTATTTGTAAAGGTATGGCATTGATGAGATAAAATTCGATG
TTAATGTTAATGGCTTTCAGCTCGGATAATTGGAAAAGTTTTCAATGTAT
GACCGTCCATAAGGGTTTTGTTTCAAAATTTGTAGGAGTAAACCAGGCAT
AGGTAATTTCAAAACTATTTCTACTAGTACACTCAAGCTGTTCAGGTGCA
TATAAGCTCTTTTTAGAGATTTGAATCTCAAACTCAAATGGAGCAAGAGG
AACAAGGGCCACCTCGAAGGGCCACCCCCTAGTACAGGGGGAACAGGTCA
CAGTCCTTTTACTGCACCACAGGGCTCAGTATGTGCTGTTGTTTAAGAGA
TCTGGACAATGTTTTCCCCATGTGCATACAGATGTATAGACCTGAGTCTT
TGTTGGATTTTATGCCACTTTATCATTCCTTGAGATCTCCATGAGAAGAG
CGAACTGGGAGTCTTCCCCTATTGGGAAGGGATGATGAGTCACTGCACAT
TCATGAAGAATGTCCACTCTAAGTTTTTATCCTCAGAAGTGAAATCAATA
AGGTAAATACAGTACATTCACATATGTACTGTGAATTCTTCCTCAGACCT
GAAGTAACTGCTGATTTCTATATTTCCAGCTCANATCANGACATCCTCTT
TATATTTGAAAAAAATCATACAAAATATTTAATATCAATATTTCTTTATT
CCCAAAAAAATTATTTCTGAATTTCCTGCTGTTTCATCCTTGAAAGTGNA
CAGNAAAAAAATGACCCCAGTGTTATTTTTTTTTGTGGAACAAACCTATG
GGTAGTCCTAATTATAGTGGCCCTTTTTCAAAATCCCAAAAAAAAATTTT
TTTTTGCTTCCATACTTTACCGTTCCTTTACATTTATCTCTTGTTTTCCC
CCGTTTATAACTAACCACATCACTTTTCTTCCTCTGAACAAGAATACTCT
TTACTCTTCTTCTTCTTTCCTAATACCTATTATTCTTTTGTGTTCTATCC
TCTATTCCTTATTATTTTTTTTTTTCTAATTTTTTTTAAATCTAACCTTT
CCTTATGTCTTCTCCTCTTCCTTCCAAATTCTTATCTTTTTTTCTATTCT
TTCTTT

NCCCCGTGTTTTTTTAACATGGAGNCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTCTTCTCAAGAGATAGCCCCTCTG
GCTATCTATCCCTTGCCTTCTTGGAAGATGAGTGGGGATGAGAGCCCTGG
GATGTATGCTTGTTATAGTGTGTGTGTGCTGTGTGTTTGGCACATGTGTT
AGGTGCAGAGTGTGCGGGCCCGCACTTTCGCCATGGTAGCTTAGGCTTTT
GCTGCAGGGGAGGCGGGACAATCTCCTCAGATTAGGTTTGCCGCTCTAAA
AGAAATTATGCTGCGTTATGCCGTGGGGTGCGAGGCTAAGCACTGCACAG
AGGATAGCTTGCTGTTGGCATCCTGTGGAAGGCATGTCTGATTGCATAAA
GGTTCAGTGTTTTAGTTCCCAGGAAAAACGACACGGGAGCTGGCCAAGAC
CTCTCTGCGTGATGTTCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCT
TGCACACTGGGGATCAGACCTCTACCTTCACCCATGAGGATTGCTTGCAG
CAATTAAGATCTGGCCATAGATTAATCAACAACTGGCCTTTTGATGCACC
TGCCGCAAGCAAAACACAATCTCCCCAGGTGTGGCTTGGCATGATAGAGA
GGTAGTCAGTGATAAGATTCCCTGGGCATGTCACCAACCTTAAGACAGGG
ATCAAACCAATGCTGTTTGTCTCCCAACGACGGGTAAGGTGCATGTCTGC
GGGGGGCTATCTACAGACATTCTCTCTGTCCAAAAAGTATTTTTTTTTAG
ATGTGAGGAGCGGTTGTGTTTTCATTCTCTTATGCTTCAGGGACTTGCTC
TTATTCGATGATTTTGCCTTGATTTTCTTTTTAAATCCTCAACCTCTTGT
TTATTTCTTCTGTTGTACCTTATTTTGTGTTTTCTTTTTTTGGTATTTTT
CCTTTTTTTTTTGTTTTTTTATCTTTTTTTCTCTTGTTTTTTTTTTCTTT
CGTTATTTCTTTTTTTCCTTTTTTTTTTTTTTTTCTTTATTTTTTTTTTT
TTTTCTGTTTCTTTTTTCCCATTCCTTTTCTATTTTTCTTATCTTCTTTC
TTTTCTTTTTTTCTCTATTTTTTCCTTTTTTTTTTTTCTTCTGTTTCTTA
TCTTTCTTTGTTTCTCTTTCTCTTTTTTTTTCTATTTTCTTTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_o14.b1 MSMg01no207_o14.b1 CHROMAT_FILE:
MSMg01no207_o14.b1 PHD_FILE: MSMg01no207_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:27 2005
         (412 letters)



>mm_chr1_97825709_97826521
          Length = 813

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%), Gaps = 1/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgaggaaatcttttc-aagtaatatacagtaaacctagttgaattaatgtttt 63
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 613 gaattcctgaggaaatcttttcaaagtaatatacagtaaacgtagttgaattaatgtttt 554

                                                                       
Query: 64  caatataaatatttccgcaattataatagctatcatatacagacagttgataattatttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 caatataaatatttccgcaattataatagctatcatatacagacagttgatgattatttg 494

                                                                       
Query: 124 taaaggtatggcattgatgagataaaattcgatgttaatgttaatggctttcagctcgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taaaggtatggcattgatgagataaaattcgatgttaatgttaatggctttcagctcgga 434

                                                                       
Query: 184 taattggaaaagttttcaatgtatgaccgtccataagggttttgtttcaaaatttgtagg 243
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 433 taattggaaaagttttcaatgtatgaccgaccataagggctttgtttcaaaatttgtagg 374

                                                                       
Query: 244 agtaaaccaggcataggtaatttcaaaactatttctactagtacactcaagctgttcagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtaaaccaggcataggtaatttcaaaactatttctactagtacactcaagctgttcagg 314

                                                                       
Query: 304 tgcatataagctctttttagagatttgaatctcaaactcaaatggagcaagaggaacaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgcatataagctctttttagagatttgaatctcaaactcaaatggagcaagaggaacaag 254

                                                            
Query: 364 ggccacctcgaagggccaccccctagtacagggggaacaggtcacagtc 412
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggccacctcgaagggccaccccctagtacagggggaacaggtcacagtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space:   324012
Effective search space used:   324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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