BAC Information

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BAC

Clone NameMSMg01-210D21
Chromosome1 (Build37)
Map Location 166,078,497 - 166,187,054
singlet/doubletdoublet
Overlap geneSelp, F5, Slc19a2
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell
Downstream gene4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210D21.T7 (MSMg01no210_d21.b1)MSMg01-210D21.TJ (MSMg01no210_d21.g1)
ACCAG392436AG392437
length754733
length of high quality
(start - end)		319 (46 - 364)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no210_d21.b1 PHD_FILE: MSMg01no210_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:42 2005CHROMAT_FILE: MSMg01no210_d21.g1 PHD_FILE: MSMg01no210_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,078,497 - 166,078,811)(166,186,763 - 166,187,054)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGTAGGTGCCAGTCTGTTGTTTCTGAAGCTACCATGGGCTGG
CTGATGGGAGAACTAGCTTTTATTTCCTGGCAGGTCATCTTTGTGTTTTT
GTTTTTCAGCCACCTAGGAACATACGGAGTCTTCACTAACGCTGCATATG
ACCCAACCCCTTAAGGTGAGTTCCCTATGAGGACGGCTTTGAAGAAAATA
GAACAGTAGGTGAAAAGGCAAGAATACCAGTCTTGAATTTTCTTTATATC
ATATGTATGGAATTTTAAGCATGTATTATAATATTAAGCTCTGATATTGG
CAACAAGTATGTGTTACGTAGNTCCCCNAACCGCCCTATCCTTGGATTTC
CATTCCCGCCCAGATGACACCCCCAAAAAAAAAAAAAAAGTTCCNGGATG
TTTGAGATCCCACTGATGCCAAGGAAGTGACGTTGACAGTGTGGGCTTGC
CTCAAAATCCCCTGTGCTACCTGAGCAGAAACTACCTGAAGAGTATCACT
TTTCAAACAGTACATGGATAAGTCCCCTTTCCTGCTGGTAGACAGTGCAT
TAACTAGATAGAGGCAAATGTTTCAAACATCATAGTGGCCCACGTTGAAA
AGAATCTATTATCTCGTATTGAAGCAATCCCTTATTCCCTTACAACTTTT
CCTATAAATTTCATCTCTCTATTGCTTCCCCCCACCTCTTATTTTTTTTT
TTCC

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAACTGAATGGCCAGCAGTCC
CTGGGCATAGAGCAGCATGAACCACGTCACAATCAGGCTGAGTCCCTGCA
GCAGGATGACAGGCTTGTACCGGAGGTAGTCTGTGGCAAGGAACACGGGA
AACAGCAGCAGCAGGTAAGAGTACGTCCACACCGGATAAATTTCATTGTA
GACCTGGTAGGAAGAGTGAAAGCTCGTTAGTGATCAACAGACCCGACAAG
CCATAAGAATGTATTCCTACAAAACAGCCCGCCAACACTCCCTTATCCCC
GGAGAAACACTGGCCACAGTAAGTTCAGCCACCTCCTGGAGTAGCCTTTC
CTATCCCCTCGGCATAATAAAACCCTTTCCCTACACCAAGGATCTTGCTC
TGTGGCCCAGGCTGGACTCAAAAGCACACTGAAGATCAAACTAGTCTGGG
ACTGCGGAGCCTCCTGCCTCAGCCTTCCGTGTGCTGCGATTACGGGGATT
TTCTATCTCACTCATCCCCAGCACCTGAAGGTTTCTGAGAGGCGGACCCA
GCACTCATCTGTATAACTTAACAGGCAGCAGACTGTCTGTAAAGAACCAA
GACCAACACATGTTTTGGAAATTAAACCCTTGTCCATTTATCTCCAAAAT
TATTATTATTTCCATTAGAATTCCTACATATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_d21.b1 MSMg01no210_d21.b1 CHROMAT_FILE:
MSMg01no210_d21.b1 PHD_FILE: MSMg01no210_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:42 2005
         (319 letters)



>mm_chr1_166078293_166079011
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagggtaggtgccagtctgttgtttctgaagctaccatgggctggctgatggga 64
           ||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattccagggtagggggcggtctgttgtttcagaagctaccatgggctggctgatggga 264

                                                                       
Query: 65  gaactagcttttatttcctggcaggtcatctttgtgtttttgtttttcagccacctagga 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaactagcttttatttcatggcaggtcatctttgtgtttttgtttttcagccacctagga 324

                                                                       
Query: 125 acatacggagtcttcactaacgctgcatatgacccaaccccttaaggtgagttccctatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatacggagtcttcactaacgctgcatatgacccaaccccttaaggtgagttccctatg 384

                                                                       
Query: 185 aggacggctttgaagaaaatagaacagtaggtgaaaaggcaagaataccagtcttgaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggacggctttgaagaaaatagaacagtaggtgaaaaggcaagaataccagtcttgaatt 444

                                                                       
Query: 245 ttctttatatcatatgtatggaattttaagcatgtattataatattaagctctgatattg 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ttctttatatcatatgtatggaattttaagcatgtattagaatattaagctctgatattg 504

                          
Query: 305 gcaacaagtatgtgt 319
           |||||||||||||||
Sbjct: 505 gcaacaagtatgtgt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no210_d21.g1 MSMg01no210_d21.g1 CHROMAT_FILE:
MSMg01no210_d21.g1 PHD_FILE: MSMg01no210_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:42 2005
         (292 letters)



>mm_chr1_166186563_166187254
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaactgaatggccagcagtccctgggcatagagcagcatgaaccacgtcacaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caagaactgaatggccagcagtccctgggcatagagcagcatgaaccacgtcacaatcag 433

                                                                       
Query: 61  gctgagtccctgcagcaggatgacaggcttgtaccggaggtagtctgtggcaaggaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctgagtccctgcagcaggatgacaggcttgtaccggaggtagtctgtggcaaggaacac 373

                                                                       
Query: 121 gggaaacagcagcagcaggtaagagtacgtccacaccggataaatttcattgtagacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gggaaacagcagcagcaggtaagagtacgtccacaccggataaatttcattgtagacctg 313

                                                                       
Query: 181 gtaggaagagtgaaagctcgttagtgatcaacagacccgacaagccataagaatgtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gtaggaagagtgaaagctcgttagtgatcaacagacccgacaagccataagaatgtattc 253

                                                               
Query: 241 ctacaaaacagcccgccaacactcccttatccccggagaaacactggccaca 292
           |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 252 ctacaaaacagcccaccaacactcccttatccccggagaaatactggccaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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