BAC Information

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BAC

Clone NameMSMg01-210F03
Chromosome1 (Build37)
Map Location 28,651,399 - 28,651,663
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040952, EG433281, EG665903
Downstream geneGm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210F03.T7 (MSMg01no210_f03.b1)MSMg01-210F03.TJ (MSMg01no210_f03.g1)
ACCAG392483AG392484
length723708
length of high quality
(start - end)
327 (45 - 371)265 (377 - 641)
definitionCHROMAT_FILE: MSMg01no210_f03.b1 PHD_FILE: MSMg01no210_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:48 2005CHROMAT_FILE: MSMg01no210_f03.g1 PHD_FILE: MSMg01no210_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCCGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATTATCAGGGCAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACACCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTAGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTTAGA
AAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCAT
ATATCCATAATATGTCCCAACCGCCCGAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAAAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTTGAGGGCATCATCCTGAGCGAGGTAACCCAATCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGGTACTAGCCCAAAACTT
AGTATACCCCAGATATAAGATACAATTTGCCAAATGCATGAAACTCTAGA
AAAATGAAGACCTAAGTGTGTAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCAGCAAAATTCAGGCAACATATGGTGCCCCATGAATATT
AAATTTCATATTTTTTTATCTCATGAAGAAAAACATTTAGTTTAAATTTA
GTGATAAAATTAGTTTGAATTTGAAATCTGTCTTGTGTCTACCGAAACTT
TAACTATGTGTTAAAATCATTATGAACTGAGAGGTCCCTGAGGCAACTCT
TATCAAAACACCTACAGTTGTTCATCAGTCACCGAATCTCAGAACAATTT
TCAGTGAAATAAATTAGTGGATTTTCATTAAATTTTCATTAAGGATGTTG
GAATTTTTTTGTTCCCCCCCCCCCCATACATCCCATATTCTTATTATGGT
CTCAACCACCATGAAAGTACATATAAATATTTATTACATGTTTTCTTCAT
AAATCACAATAAATTAGAAATGATTCAAATAAACGTGGTCCGTTCTAAGA
GTTTATCAGTTTCACTTCTAAAATAAATCCATCTACTAGTTCATGTTAGA
CCTAGTCACAATACCTGGCCTCATTTTAGTGATTATGTTTAATTCTTATT
AATCTCATTTCCTCTGAATTTAACTGCTTTAACATGAACCATGTGCCCAG
TACTGTGACTATCACTGGGGTGGCTCTATTGTGGTACTGAGCTCATTATT
AATTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_f03.g1 MSMg01no210_f03.g1 CHROMAT_FILE:
MSMg01no210_f03.g1 PHD_FILE: MSMg01no210_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:48 2005
         (265 letters)



>mm_chr1_28651199_28651863
          Length = 665

 Score =  497 bits (257), Expect = e-145
 Identities = 263/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatcccatattcttattatggtctcaaccaccatgaaagtacatataaatatttatta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tacatcccatattcttattatggtctcaaccaccatgaaagtacatataattatttatta 260

                                                                       
Query: 61  catgttttcttcataaatcacaataaattagaaatgattcaaataaacgtggtccgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgttttcttcataaatcacaataaattagaaatgattcaaataaacgtggtccgttct 320

                                                                       
Query: 121 aagagtttatcagtttcacttctaaaataaatccatctactagttcatgttagacctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagtttatcagtttcacttctaaaataaatccatctactagttcatgttagacctagt 380

                                                                       
Query: 181 cacaatacctggcctcattttagtgattatgtttaattcttattaatctcatttcctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaatacctggcctcattttagtgattatgtttaattcttattaatctcatttcctctg 440

                                    
Query: 241 aatttaactgctttaacatgaacca 265
           |||||||||||| ||||||||||||
Sbjct: 441 aatttaactgctataacatgaacca 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)