Query= MSMg01no210_m20.b1 MSMg01no210_m20.b1 CHROMAT_FILE:
MSMg01no210_m20.b1 PHD_FILE: MSMg01no210_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:29 2005
(600 letters)
>mm_chr1_110681338_110682337
Length = 1000
Score = 837 bits (433), Expect = 0.0
Identities = 495/516 (95%)
Strand = Plus / Minus
Query: 81 tgcaaatcaaaacaacccatgattccacctcacaccagtcagaatggctaagatcaaaat 140
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 994 tgcaaatcaaaacaacccttgattccaactctcaccagtcagaatggctaagatcaaaat 935
Query: 141 tcaggtgacagcagatactgtttaggatgtggagaaagaggaacacttctccattattgg 200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 934 tcaggtgacagcagatactgtttaggatgtggagaaagaggaacactcctccattattgg 875
Query: 201 tgggattgcaagcttgtacaaccactctgtaaatcagtcgggtggttcctcagaaaattg 260
||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 874 tgggattgcaagcttatacatccactctggaaatcagtcgggtggttattcagaaaattg 815
Query: 261 gacatagtactacctgagcttgacttctataacccatatcaggaagcacacatctgctat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 814 gacatagtactacctgagcttgacttctataacccatatcaggaagcacacatctacaat 755
Query: 321 aactacagctctataagatttaatccctctagcttaaatgaggaattgtgctcaagagga 380
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aactacagttctagcagatttaatccctctagcttaaatgaggaattgtgctcaagagga 695
Query: 381 tatacccacacagagaaacaaatacacttatacataaataacactagtaaaataaatgtt 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 catacccacacagagaaacaaatacacttatacataaataacactagtaaaataaatgtt 635
Query: 441 taaaacaaaattatgttcatagctaaatattagttgggtctttgggaatcctatagaaga 500
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 634 taaaacaaaatgatgttcatagctaaatattagttgggtctttgggaatcctgtagaaga 575
Query: 501 aggtagaaggattgtaggaggcacaagagtcataaataccataagtcaatttacagaata 560
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 574 aggtagaaggattgtaggaggcacaagagtcataaataccataagtaaatctacagaata 515
Query: 561 nactaaactggacgttcagatgttcaccaagactaa 596
||||||||||||||||||| |||||||||||||||
Sbjct: 514 aactaaactggacgttcagaggttcaccaagactaa 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no210_m20.g1 MSMg01no210_m20.g1 CHROMAT_FILE:
MSMg01no210_m20.g1 PHD_FILE: MSMg01no210_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:29 2005
(286 letters)
>mm_chr1_110598923_110599608
Length = 686
Score = 474 bits (245), Expect = e-138
Identities = 274/285 (96%), Gaps = 4/285 (1%)
Strand = Plus / Plus
Query: 1 tcagaagtagttgaaacttggctgctgagtaaatctatcaaataatttacgtataattct 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 201 tcagaagtagttgaaacttggctgctgagtaaatctatcaaataatttatgtataaatct 260
Query: 61 aacaactcaggtcattgatgccagtaatcgtattctagaattcttctaatcagtgcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaactcaggtcattgatgccagtaatcgtattctagaattcttctaatcagtgcaaat 320
Query: 121 aagctgtatactcgtcttcgtattacccacatagtttgtatgatttcattctagaaaata 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctgtacactcgtcttcgtattacccacatagtttgtatgatttcattctagaaaata 380
Query: 181 cactaacatcaatatatttgtgtcatgtttttcctttatttctttaagaaatatattagt 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 381 cactaacatcaatatatttgtggcatgtttttcctttatttctttaagaaatatattcgt 440
Query: 241 ttcttctttttt--ggcttccttcataatgaaatgattagattta 283
|| ||| ||| |||||||||||||||||||||||||||||||
Sbjct: 441 tt--tctctttaaaggcttccttcataatgaaatgattagattta 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
